match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	cd12636	81	24	24.9	34	[                                    ---------    ]	RRM2_Bruno_like	RNA recognition motif 2 in Drosophila melanogaster Bruno protein and similar proteins. This subgroup corresponds to the RRM2 of Bruno, a Drosophila RNA recognition motif (RRM)-containing protein that plays a central role in regulation of Oskar (Osk) expression. It mediates repression by binding to regulatory Bruno response elements (BREs) in the Osk mRNA 3' UTR. The full-length Bruno protein contains three RRMs, two located in the N-terminal half of the protein and the third near the C-terminus, separated by a linker region.
2	pfam12476	52	25	22.1	63	[    ----------                                   ]	DUF3696	Protein of unknown function (DUF3696). This domain family is found in bacteria and archaea, and is approximately 50 amino acids in length.
3	cd01611	112	32	21.0	60	[                   -----------------             ]	GABARAP	Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
4	PRK01066	231	28	20.1	58	[                             ----------          ]	PRK01066	porphobilinogen deaminase; Provisional
5	pfam02918	109	14	16.5	71	[                                    -----        ]	Pertussis_S2S3	Pertussis toxin, subunit 2 and 3, C-terminal domain.
6	pfam11182	180	45	14.0	4.6E+02	[ -----------------                               ]	AlgF	Alginate O-acetyl transferase AlgF. AlgF is essential for the addition of O-acetyl groups to alginate, an extracellular polysaccharide. The presence of O-acetyl groups plays an important role in the ability of the polymer to act as a virulence factor.
7	TIGR03866	310	75	13.4	3.7E+02	[ -----------------------------------             ]	PQQ_ABC_repeats	PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
8	pfam02991	104	31	13.1	1.2E+02	[                   -----------------             ]	Atg8	Autophagy protein Atg8 ubiquitin like. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19.
9	TIGR04085	93	18	12.5	1.4E+02	[                                   -------       ]	rSAM_more_4Fe4S	radical SAM additional 4Fe4S-binding SPASM domain. This domain contains regions binding additional 4Fe4S clusters found in various radical SAM proteins C-terminal to the domain described by model pfam04055. Radical SAM enzymes with this domain tend to be involved in protein modification, including anaerobic sulfatase maturation proteins, a quinohemoprotein amine dehydrogenase biogenesis protein, the Pep1357-cyclizing radical SAM enzyme, and various bacteriocin biosynthesis proteins. The motif CxxCxxxxxCxxxC is nearly invariant for members of this family, although PqqE has a variant form. We name this domain SPASM for Subtilosin, PQQ, Anaerobic Sulfatase, and Mycofactocin.
10	pfam10584	23	12	12.3	1.2E+02	[                                         ----    ]	Proteasome_A_N	Proteasome subunit A N-terminal signature. This domain is conserved in the A subunits of the proteasome complex proteins.