match no. | target id | target length | alignment length | probability | E-value | coverage | match description |
1 | cd12636 | 81 | 24 | 24.9 | 34 | [ --------- ] | RRM2_Bruno_like | RNA recognition motif 2 in Drosophila melanogaster Bruno protein and similar proteins. This subgroup corresponds to the RRM2 of Bruno, a Drosophila RNA recognition motif (RRM)-containing protein that plays a central role in regulation of Oskar (Osk) expression. It mediates repression by binding to regulatory Bruno response elements (BREs) in the Osk mRNA 3' UTR. The full-length Bruno protein contains three RRMs, two located in the N-terminal half of the protein and the third near the C-terminus, separated by a linker region. |
2 | pfam12476 | 52 | 25 | 22.1 | 63 | [ ---------- ] | DUF3696 | Protein of unknown function (DUF3696). This domain family is found in bacteria and archaea, and is approximately 50 amino acids in length. |
3 | cd01611 | 112 | 32 | 21.0 | 60 | [ ----------------- ] | GABARAP | Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. |
4 | PRK01066 | 231 | 28 | 20.1 | 58 | [ ---------- ] | PRK01066 | porphobilinogen deaminase; Provisional |
5 | pfam02918 | 109 | 14 | 16.5 | 71 | [ ----- ] | Pertussis_S2S3 | Pertussis toxin, subunit 2 and 3, C-terminal domain. |
6 | pfam11182 | 180 | 45 | 14.0 | 4.6E+02 | [ ----------------- ] | AlgF | Alginate O-acetyl transferase AlgF. AlgF is essential for the addition of O-acetyl groups to alginate, an extracellular polysaccharide. The presence of O-acetyl groups plays an important role in the ability of the polymer to act as a virulence factor. |
7 | TIGR03866 | 310 | 75 | 13.4 | 3.7E+02 | [ ----------------------------------- ] | PQQ_ABC_repeats | PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
8 | pfam02991 | 104 | 31 | 13.1 | 1.2E+02 | [ ----------------- ] | Atg8 | Autophagy protein Atg8 ubiquitin like. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity. Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N-terminus and the C-terminus of Atg19. |
9 | TIGR04085 | 93 | 18 | 12.5 | 1.4E+02 | [ ------- ] | rSAM_more_4Fe4S | radical SAM additional 4Fe4S-binding SPASM domain. This domain contains regions binding additional 4Fe4S clusters found in various radical SAM proteins C-terminal to the domain described by model pfam04055. Radical SAM enzymes with this domain tend to be involved in protein modification, including anaerobic sulfatase maturation proteins, a quinohemoprotein amine dehydrogenase biogenesis protein, the Pep1357-cyclizing radical SAM enzyme, and various bacteriocin biosynthesis proteins. The motif CxxCxxxxxCxxxC is nearly invariant for members of this family, although PqqE has a variant form. We name this domain SPASM for Subtilosin, PQQ, Anaerobic Sulfatase, and Mycofactocin. |
10 | pfam10584 | 23 | 12 | 12.3 | 1.2E+02 | [ ---- ] | Proteasome_A_N | Proteasome subunit A N-terminal signature. This domain is conserved in the A subunits of the proteasome complex proteins. |