match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	2WTE_A	244	172	99.9	3.6E-23	[------------------------------------------- ]	CSA3; ANTIVIRAL PROTEIN, VIRAL RESISTANCE, WINGED; 1.8A {SULFOLOBUS SOLFATARICUS}
2	2WTE_B	244	172	99.9	3.6E-23	[------------------------------------------- ]	CSA3; ANTIVIRAL PROTEIN, VIRAL RESISTANCE, WINGED; 1.8A {SULFOLOBUS SOLFATARICUS}
3	3QYF_A	324	121	99.3	1.3E-12	[ --------------------------------- ]	CAS3; HELIX-TURN-HELIX, ANTIVIRAL PROTEIN, VIRAL RESISTANCE; 1.9A {Sulfolobus solfataricus}
4	3F8B_B	116	64	98.5	1.7E-07	[ ---------------- ]	Transcriptional regulator, PadR-like family; Winged helix turn helix, TRANSCRIPTION; 2.0A {Lactococcus lactis subsp. cremoris}
5	2LNB_A	80	63	98.4	6.1E-07	[ --------------- ]	Z-DNA-binding protein 1; Structural Genomics, NORTHEAST STRUCTURAL GENOMICS; NMR {Homo sapiens}
6	2PN6_A	150	49	98.4	7.3E-07	[ ------------ ]	150aa long hypothetical transcriptional regulator; Transcriptional regulator, Lrp/AsnC family Gln; HET: GLN; 1.44A {Sulfolobus tokodaii}
7	3EYI_B	72	61	98.4	3.6E-07	[ --------------- ]	Z-DNA-binding protein 1/Z-DNA complex; DNA-binding, DNA Binding Protein-Z-DNA COMPLEX; 1.45A {Homo sapiens}
8	2GXG_A	146	67	98.4	6.3E-07	[ ----------------- ]	146aa long hypothetical transcriptional regulator; Winged Helix, TRANSCRIPTION; 1.45A {Sulfolobus tokodaii}
9	1WI9_A	72	60	98.4	5.9E-07	[ --------------- ]	Protein C20orf116 homolog; helix-turn-helix motif, STRUCTURAL GENOMICS, RIKEN; NMR {Mus musculus} SCOP: a.4.5.47
10	2NNN_A	140	66	98.4	6.7E-07	[ ---------------- ]	Probable transcriptional regulator; Pseudomonas aeruginosa, probable transcriptional regulator; 2.4A {Pseudomonas aeruginosa}
11	2RDP_A	150	67	98.4	6.7E-07	[ ----------------- ]	putative transcriptional regulator MarR; MarR, transcriptional regulator, pfam PF01047; HET: PO4; 2.3A {Geobacillus stearothermophilus}
12	2FU4_A	83	55	98.4	1.1E-06	[ -------------- ]	Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA; HET: CL; 1.8A {Escherichia coli}
13	2NNN_F	140	66	98.4	6.7E-07	[ ---------------- ]	Probable transcriptional regulator; Pseudomonas aeruginosa, probable transcriptional regulator; 2.4A {Pseudomonas aeruginosa}
14	3BRO_B	141	67	98.4	9.5E-07	[ ----------------- ]	Transcriptional regulator; helix_turn_helix, multiple antibiotic resistance protein; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
15	3GFI_A	146	67	98.4	6.3E-07	[ ----------------- ]	146aa long hypothetical transcriptional regulator/DNA; Transcription regulator, ST1710, MarR, DNA-binding; 2.1A {Sulfolobus tokodaii}
16	4AIK_A	151	67	98.4	1.1E-06	[ ----------------- ]	TRANSCRIPTIONAL REGULATOR SLYA; TRANSCRIPTION, TRANSCRIPTION FACTOR, GLOBAL REGULATOR; 1.85A {YERSINIA PSEUDOTUBERCULOSIS}
17	1I1G_B	141	49	98.4	1.1E-06	[ ------------ ]	TRANSCRIPTIONAL REGULATOR LRPA; helix-turn-helix, Lrp/AsnC family, Pyrococcus furiosus; 2.9A {Pyrococcus furiosus} SCOP: d.58.4.2, a.4.5.32
18	4XRF_A	142	67	98.3	7.9E-07	[ ----------------- ]	Transcriptional regulator, MarR family; WINGED HELIX TURN HELIX TRANSCRIPTION; HET: GOL, PO4, DAO, ISQ; 2.16A {Bacillus cereus (strain ATCC 14579 / DSM 31)}
19	5HLI_A	149	67	98.3	9.7E-07	[ ----------------- ]	MarR family transcriptional regulator; disulfide, transcription factor, TRANSCRIPTION REGULATOR; 2.05A {Staphylococcus epidermidis}
20	5BQT_C	262	67	98.3	7.3E-07	[ ----------------- ]	Putative HTH-type transcriptional regulator TrmBL2; Chromatin binding protein, archaea, DNA; 3.0A {Pyrococcus furiosus}
21	1Z91_A	147	67	98.3	6.6E-07	[ ----------------- ]	Organic hydroperoxide resistance transcriptional regulator; OhrR, MarR family, Bacterial transcription; 2.5A {Bacillus subtilis} SCOP: a.4.5.28
22	2IA0_B	171	51	98.3	1.5E-06	[ ------------- ]	TRANSCRIPTIONAL REGULATORY PROTEIN, ASNC FAMILY; PF0864, ASNC, PYROCOCCUS FURIOSUS, PSI; 2.37A {Pyrococcus furiosus}
23	2IA0_A	171	51	98.3	1.5E-06	[ ------------- ]	TRANSCRIPTIONAL REGULATORY PROTEIN, ASNC FAMILY; PF0864, ASNC, PYROCOCCUS FURIOSUS, PSI; 2.37A {Pyrococcus furiosus}
24	1Z9C_C	147	67	98.3	6.6E-07	[ ----------------- ]	OhrR/DNA/DNA; OhrR, MarR family protein, bacterial; 2.64A {Bacillus subtilis} SCOP: a.4.5.28
25	5JLU_A	150	67	98.3	1.4E-06	[ ----------------- ]	Adhesin competence repressor; Metal-sensing transcription regulator, DNA binding; 2.2A {Streptococcus pyogenes serotype M3}
26	3BDD_A	142	66	98.3	1.2E-06	[ ---------------- ]	Regulatory protein MarR; PUTATIVE MULTIPLE ANTIBIOTIC-RESISTANCE REPRESSOR, STRUCTURAL; HET: GOL, PO4; 2.2A {Streptococcus suis}
27	1SD4_A	126	64	98.3	1.5E-06	[ ---------------- ]	PENICILLINASE REPRESSOR; BlaI, MecI, repressor, methicillin, B-lactam; HET: SO4; 2.0A {Staphylococcus aureus} SCOP: a.4.5.39
28	5H20_A	111	65	98.3	9.5E-07	[ ---------------- ]	Putative PadR-family transcriptional regulatory protein; bacteroid fragilis, transcription factor, PadR; HET: GLC, PO4; 2.5A {Bacteroides fragilis}
29	5BPD_C	264	66	98.3	1.1E-06	[ ---------------- ]	TrmBL2/DNA Complex; Chromatin binding protein, Archaea, DNA; HET: IMD, GOL; 2.4A {Pyrococcus furiosus}
30	2A61_D	145	67	98.3	1.3E-06	[ ----------------- ]	transcriptional regulator Tm0710; TM0710, APC4350, MCSG, Midwest Center; 1.8A {Thermotoga maritima} SCOP: a.4.5.28
31	2A61_C	145	67	98.3	1.3E-06	[ ----------------- ]	transcriptional regulator Tm0710; TM0710, APC4350, MCSG, Midwest Center; 1.8A {Thermotoga maritima} SCOP: a.4.5.28
32	2DQL_A	115	67	98.3	1.4E-06	[ ----------------- ]	Pex protein; circadian clock associated protein, CIRCADIAN; 1.7A {Anabaena sp. PCC 7120}
33	2HEO_A	67	58	98.3	3.1E-06	[ -------------- ]	Z-DNA binding protein 1/DNA Complex; PROTEIN DLM1-Z-DNA COMPLEX, Immune System-DNA; 1.7A {Mus musculus}
34	3JW4_C	148	67	98.3	1.1E-06	[ ----------------- ]	Transcriptional regulator, MarR/EmrR family; MarR, emrR, transcriptional regulator, DNA-binding; HET: GOL; 2.1A {Clostridium acetobutylicum}
35	3I4P_A	162	48	98.3	2E-06	[ ------------ ]	Transcriptional regulator, AsnC family; TRANSCRIPTIONAL REGULATOR, ASNC FAMIL, PSI; 2.3A {Agrobacterium tumefaciens str. C58}
36	2G9W_A	138	66	98.3	2E-06	[ ---------------- ]	conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor; 1.8A {Mycobacterium tuberculosis} SCOP: a.4.5.39
37	4ASN_C	101	66	98.3	1.6E-06	[ ---------------- ]	TUBR; TRANSCRIPTION, TUBULIN, FTSZ, SEGREGATION, PARTITION; 3.5A {BACILLUS MEGATERIUM}
38	4MNU_A	153	67	98.3	1.3E-06	[ ----------------- ]	SlyA-like transcription regulator; Structural Genomics, PSI-Biology, Midwest Center; HET: SO4; 1.898A {Listeria monocytogenes}
39	3F6V_A	151	64	98.3	1.1E-06	[ ---------------- ]	Possible transcriptional regulator, ArsR family; Rhodococcus sp., probable transcriptional repressor; 1.48A {Rhodococcus sp. RHA1}
40	1F5T_C	121	65	98.3	2.1E-06	[ ---------------- ]	DIPHTHERIA TOXIN REPRESSOR/DNA COMPLEX; iron-regulated repressor, DNA-protein complex, helix-turn-helix; 3.0A {Corynebacterium diphtheriae} SCOP: a.4.5.24, a.76.1.1
41	5CYV_A	146	67	98.3	1.9E-06	[ ----------------- ]	Transcriptional regulator; TRANSCRIPTION REGULATOR, p-hydroxycinnamate metabolism, MCSG; HET: WCA; 1.52A {Rhodococcus jostii (strain RHA1)}
42	1ON2_A	142	64	98.3	2.3E-06	[ ---------------- ]	Transcriptional regulator mntR; Helix-turn-helix, DNA-Binding Protein, Metalloregulatory Protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24, a.76.1.1
43	2PEX_B	153	67	98.3	2.3E-06	[ ----------------- ]	Transcriptional regulator OhrR; transcription regulator; HET: FMT; 1.9A {Xanthomonas campestris}
44	1BJA_B	95	66	98.3	2.5E-06	[ ----------------- ]	TRANSCRIPTION REGULATORY PROTEIN MOTA; ACTIVATION DOMAIN, PHAGE T4, MIDDLE; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9
45	3MEX_B	142	67	98.3	1.1E-06	[ ----------------- ]	Multidrug resistance operon repressor; antibiotics resistance regulation, oxidative stress; 2.1A {Pseudomonas aeruginosa}
46	1Y0U_B	96	64	98.3	2.9E-06	[ ---------------- ]	arsenical resistance operon repressor, putative; Structural Genomics, Protein Structure Initiative; 1.6A {Archaeoglobus fulgidus} SCOP: a.4.5.5
47	3F3X_A	144	65	98.3	1.4E-06	[ ---------------- ]	Transcriptional regulator, marR family, putative; DNA binding protein, transcriptional regulator; 1.9A {Sulfolobus solfataricus}
48	1XSD_A	126	64	98.2	1.5E-06	[ ---------------- ]	penicillinase repressor/DNA Complex; winged helix protein, TRANSCRIPTION-DNA COMPLEX; 2.7A {Staphylococcus aureus} SCOP: a.4.5.39
49	2CO5_B	99	67	98.2	8.6E-07	[ ----------------- ]	VIRAL PROTEIN F93; VIRAL PROTEIN-WINGED HELIX COMPLEX, WINGED; 2.2A {SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS} SCOP: a.4.5.48
50	3ECH_A	142	67	98.2	1.8E-06	[ ----------------- ]	Multidrug resistance operon repressor/fragment of; winged helix, helix-turn-helix, protein-peptide complex; 1.802A {Pseudomonas aeruginosa}
51	2P5V_C	162	51	98.2	3.6E-06	[ ------------- ]	Transcriptional regulator, AsnC family; NMB0573, Transcriptional regulator, Lrp/AsnC-family, Structural; HET: CL, GOL; 1.99A {Neisseria meningitidis}
52	2P6S_G	162	51	98.2	3.6E-06	[ ------------- ]	Transcriptional regulator, AsnC family; NMB0573, Transcriptional regulator, Lrp/AsnC-family, Structural; HET: GOL, MET; 2.8A {Neisseria meningitidis}
53	2IVM_A	150	49	98.2	3.8E-06	[ ------------ ]	TRANSCRIPTIONAL REGULATORY PROTEIN; TRANSCRIPTIONAL REGULATOR, TRANSCRIPTION; 2.5A {MYCOBACTERIUM TUBERCULOSIS}
54	1OKR_B	123	67	98.2	1.6E-06	[ ----------------- ]	METHICILLIN RESISTANCE REGULATORY PROTEIN MECI; BACTERIAL ANTIBIOTIC RESISTANCE, MECI PROTEIN; HET: GOL; 2.4A {STAPHYLOCOCCUS AUREUS} SCOP: a.4.5.39
55	1Y0U_A	96	63	98.2	2.9E-06	[ ---------------- ]	arsenical resistance operon repressor, putative; Structural Genomics, Protein Structure Initiative; 1.6A {Archaeoglobus fulgidus} SCOP: a.4.5.5
56	2QWW_A	154	67	98.2	2.7E-06	[ ----------------- ]	Transcriptional regulator, MarR family; YP_013417.1, multiple antibiotic-resistance repressor (MarR); 2.07A {Listeria monocytogenes str. 4b}
57	1SFU_B	75	54	98.2	2.8E-06	[ -------------- ]	34L PROTEIN/DNA Complex; Protein-Z-DNA complex, DNA Binding Protein-DNA; 2.0A {Yaba-like disease virus} SCOP: a.4.5.19
58	4ESF_A	117	65	98.2	1.7E-06	[ ---------------- ]	PadR-like transcriptional regulator; PadR family, transcriptional regulator, DNA; 2.2A {Bacillus cereus}
59	2QWW_C	154	67	98.2	2.7E-06	[ ----------------- ]	Transcriptional regulator, MarR family; YP_013417.1, multiple antibiotic-resistance repressor (MarR); 2.07A {Listeria monocytogenes str. 4b}
60	1S3J_A	155	66	98.2	1.9E-06	[ ---------------- ]	YusO protein; Structural genomics, YusO protein, MarR; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
61	2P7C_B	82	66	98.2	4.9E-06	[ ---------------- ]	Penicillinase repressor/DNA Complex; PROTEIN-DNA COMPLEX, REPRESSOR, MONOMER, OPERATOR; NMR {Bacillus licheniformis} SCOP: a.4.5.39
62	3G3Z_A	145	66	98.2	2.5E-06	[ ---------------- ]	Transcriptional regulator, MarR family; MarR, Neisseria meningitidis, transcription factor; 2.1A {Neisseria meningitidis serogroup B}
63	1B1B_A	140	65	98.2	2.3E-06	[ ---------------- ]	PROTEIN (IRON DEPENDENT REGULATOR); IDER, IRON DEPEDENT REGULATOR, MYCOBACTERIUM; 2.6A {Mycobacterium tuberculosis} SCOP: a.4.5.24, a.76.1.1
64	5ERI_A	169	67	98.2	1.7E-06	[ ----------------- ]	MarR family transcriptional regulator; Peptoclostridium difficile, MarR, Transcription factor; 2.3A {Peptoclostridium difficile}
65	2FBH_A	146	67	98.2	2.8E-06	[ ----------------- ]	probable transcriptional regulator; MarR, transcription regulator, APC5857, Structural; 1.8A {Pseudomonas aeruginosa} SCOP: a.4.5.28
66	1OKR_A	123	67	98.2	1.6E-06	[ ----------------- ]	METHICILLIN RESISTANCE REGULATORY PROTEIN MECI; BACTERIAL ANTIBIOTIC RESISTANCE, MECI PROTEIN; HET: GOL; 2.4A {STAPHYLOCOCCUS AUREUS} SCOP: a.4.5.39
67	5CYV_B	146	67	98.2	1.9E-06	[ ----------------- ]	Transcriptional regulator; TRANSCRIPTION REGULATOR, p-hydroxycinnamate metabolism, MCSG; HET: WCA; 1.52A {Rhodococcus jostii (strain RHA1)}
68	3HHH_A	116	66	98.2	2.2E-06	[ ---------------- ]	Transcriptional regulator, PadR family; transcriptional regulator, PadR family, PF03551; HET: SO4; 2.7A {Enterococcus faecalis}
69	2FRH_B	127	66	98.2	2.9E-06	[ ----------------- ]	Staphylococcal accessory regulator A; WINGED-HELIX PROTEIN, DIVALENT METAL BINDING; 2.5A {Staphylococcus aureus} SCOP: a.4.5.28
70	4HBL_D	149	67	98.2	3.6E-06	[ ----------------- ]	Transcriptional regulator, MarR family; HTH, Transcription factor, DNA binding; 2.5A {Staphylococcus epidermidis}
71	4KA4_B	70	47	98.2	3.4E-06	[ ----------- ]	Z-DNA-binding protein 1/DNA; wHTH, DNA sensor, Z-DNA binding; 2.6A {Homo sapiens}
72	2NYX_D	168	67	98.2	2.7E-06	[ ----------------- ]	Probable transcriptional regulatory protein, Rv1404; alpha/beta, Structural Genomics, PSI-2, Protein; 2.3A {Mycobacterium tuberculosis}
73	2X4H_C	139	67	98.2	3.6E-06	[ ----------------- ]	HYPOTHETICAL PROTEIN SSO2273; TRANSCRIPTION; HET: ZN; 2.3A {SULFOLOBUS SOLFATARICUS}
74	3OOP_A	143	67	98.2	2.9E-06	[ ----------------- ]	Lin2960 protein; Protein Structure Initiative, PSI-2, Structural; 1.78A {Listeria innocua}
75	4G9Y_A	157	67	98.2	3.6E-06	[ ----------------- ]	PcaV transcriptional regulator; MarR family, winged helix-turn-helix, transcription; 2.051A {Streptomyces coelicolor}
76	5FFZ_A	140	67	98.2	3.1E-06	[ ----------------- ]	MarR family regulatory protein; Winged helix-turn-helix, protein-ligand complex, transcription; HET: ET; 2.585A {Staphylococcus aureus}
77	2ETH_B	154	67	98.2	4.1E-06	[ ----------------- ]	transcriptional regulator, putative, Mar family; marr family, structural genomics, Joint; 2.3A {Thermotoga maritima} SCOP: a.4.5.28
78	5CVI_A	215	63	98.2	1.9E-06	[ ---------------- ]	SloR; Transcription regulator, manganese regulator, DtxR; HET: MSE, EDO; 2.804A {Streptococcus mutans}
79	3PQK_B	102	61	98.2	5.4E-06	[ --------------- ]	Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional; 2.09A {Xylella fastidiosa}
80	4EJO_A	123	65	98.2	2E-06	[ ---------------- ]	Transcriptional regulator, PadR-like family; PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL; 2.1A {Eggerthella lenta}
81	5DYM_A	117	67	98.2	1.9E-06	[ ----------------- ]	PadR-family transcriptional regulator; PadR, wHTH DNA binding domain; 1.894A {Peptoclostridium difficile (strain R20291)}
82	4FX0_B	148	68	98.2	3.4E-06	[ ----------------- ]	PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN; Helix-turn-helix, Transcriptional repressor, DNA binding; 2.6981A {Mycobacterium tuberculosis}
83	3KP7_A	151	67	98.2	2.5E-06	[ ----------------- ]	Transcriptional regulator TcaR; Multiple drug resistance, biofilm, transcription; 2.3A {Staphylococcus epidermidis RP62A}
84	3HHH_B	116	67	98.2	2.2E-06	[ ----------------- ]	Transcriptional regulator, PadR family; transcriptional regulator, PadR family, PF03551; HET: SO4; 2.7A {Enterococcus faecalis}
85	3BJ6_A	152	67	98.2	3.4E-06	[ ----------------- ]	Transcriptional regulator, MarR family; MarR family, helix-turn-helix, trasnscription regulator; HET: EOH; 2.01A {Silicibacter pomeroyi DSS-3}
86	2X4H_A	139	67	98.2	3.6E-06	[ ----------------- ]	HYPOTHETICAL PROTEIN SSO2273; TRANSCRIPTION; HET: ZN; 2.3A {SULFOLOBUS SOLFATARICUS}
87	4GCV_H	168	65	98.2	3.9E-06	[ ---------------- ]	Putative transcription protein; helex-turn-helex, transcription factor, DNA binding; HET: GOL, NA, PO4; 2.3A {Pseudomonas aeruginosa PAO1}
88	4ZZL_A	158	67	98.2	4.2E-06	[ ----------------- ]	MULTIDRUG RESISTANCE OPERON REPRESSOR; TRANSCRIPTION, MEXR, MEXAB-OPRM EFFLUX PUMP; HET: GOL; 2.19A {PSEUDOMONAS AERUGINOSA}
89	3J43_U	144	65	98.2	3.3E-06	[ ---------------- ]	PROTEIN/RNA Complex; archaea, archaeal, ribosomal, 30S, protein; 9.0A {Methanococcus jannaschii}
90	5E1W_A	180	67	98.2	3.3E-06	[ ----------------- ]	Transcriptional regulator, MarR family; MarR transcriptional regulator, organohalide binding; 1.392A {Dehalococcoides sp. CBDB1}
91	3JW4_A	148	67	98.2	1.1E-06	[ ----------------- ]	Transcriptional regulator, MarR/EmrR family; MarR, emrR, transcriptional regulator, DNA-binding; HET: GOL; 2.1A {Clostridium acetobutylicum}
92	2L4M_A	69	49	98.2	4E-06	[ ------------ ]	Uncharacterized protein; Zbeta, Z-DNA binding protein, bent; NMR {Homo sapiens}
93	5E1Z_B	180	67	98.2	3.3E-06	[ ----------------- ]	Transcriptional regulator, MarR family; MarR transcriptional regulator, organohalide binding; HET: 5JC; 1.66A {Dehalococcoides mccartyi BTF08}
94	4FHT_B	157	67	98.2	3.6E-06	[ ----------------- ]	PcaV transcriptional regulator; MarR family, winged helix-turn-helix, transcription; HET: DHB; 2.15A {Streptomyces coelicolor}
95	4GCV_G	168	65	98.2	3.9E-06	[ ---------------- ]	Putative transcription protein; helex-turn-helex, transcription factor, DNA binding; HET: GOL, NA, PO4; 2.3A {Pseudomonas aeruginosa PAO1}
96	2BV6_A	142	67	98.2	2.3E-06	[ ----------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR MGRA; TRANSCRIPTIONAL REGULATOR, MULTIDRUG RESISTANCE REGULATOR; 2.8A {STAPHYLOCOCCUS AUREUS} SCOP: a.4.5.28
97	1LJ9_A	144	67	98.2	2.8E-06	[ ----------------- ]	transcriptional regulator SlyA; HTH DNA binding protein, structural; 1.6A {Enterococcus faecalis} SCOP: a.4.5.28
98	4KDP_G	151	67	98.2	2.2E-06	[ ----------------- ]	TcaR transcription regulator, DNA; Multiple drug resistance, ssDNA binding; HET: EDO, TRS; 3.6A {Staphylococcus epidermidis}
99	4FX0_A	148	68	98.2	3.4E-06	[ ----------------- ]	PROBABLE TRANSCRIPTIONAL REPRESSOR PROTEIN; Helix-turn-helix, Transcriptional repressor, DNA binding; 2.6981A {Mycobacterium tuberculosis}
100	5FO5_A	92	61	98.2	3.4E-06	[ ---------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR METR; TRANSCRIPTION, HTH, DNA-BINDING, TRANSCRIPTION REGULATION; 2.16A {ESCHERICHIA COLI K-12}
101	4EM2_A	178	67	98.2	4.4E-06	[ ----------------- ]	Uncharacterized HTH-type transcriptional regulator SAR2349; marR family proteins, MarR, salicylate; HET: SAL, SO4; 2.08A {Staphylococcus aureus}
102	5KK1_B	92	67	98.2	4.6E-06	[ ----------------- ]	AspA/DNA Complex; AspA, partition, segregation, pNOB8, TRANSCRIPTION-DNA; 3.38A {Sulfolobus sp. NOB8H2}
103	1JGS_A	138	67	98.2	5.1E-06	[ ----------------- ]	MULTIPLE ANTIBIOTIC RESISTANCE PROTEIN MARR; Transcription regulation, DNA-binding, Repressor, Antibiotic; HET: SAL; 2.3A {Escherichia coli} SCOP: a.4.5.28
104	3NRV_D	148	67	98.2	6.1E-06	[ ----------------- ]	Putative transcriptional regulator (MarR/EmrR family); Transcriptional regulator, PSI-2, Protein Structure; HET: GOL, SO4; 2.001A {Acinetobacter sp. ADP1}
105	3U1D_B	151	68	98.2	4.5E-06	[ ----------------- ]	uncharacterized protein; GntR-superfamily, Structural Genomics, PSI-Biology, Midwest; HET: EDO, TRS; 1.8A {Halomicrobium mukohataei}
106	3U1D_A	151	68	98.2	4.5E-06	[ ----------------- ]	uncharacterized protein; GntR-superfamily, Structural Genomics, PSI-Biology, Midwest; HET: TRS, EDO; 1.8A {Halomicrobium mukohataei}
107	4PZJ_A	70	63	98.2	3E-06	[ ---------------- ]	Transcriptional regulator, LysR family; STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER; 1.6A {Eggerthella lenta}
108	2P4W_B	202	57	98.2	7E-06	[ -------------- ]	Transcriptional regulatory protein arsR family; archaea, Phr, heat shock, transcriptional; 2.6A {Pyrococcus furiosus} SCOP: a.4.5.64
109	5CVI_B	215	63	98.2	1.9E-06	[ ---------------- ]	SloR; Transcription regulator, manganese regulator, DtxR; HET: MSE, EDO; 2.804A {Streptococcus mutans}
110	3NRV_B	148	67	98.2	5.6E-06	[ ----------------- ]	Putative transcriptional regulator (MarR/EmrR family); Transcriptional regulator, PSI-2, Protein Structure; HET: GOL, SO4; 2.001A {Acinetobacter sp. ADP1}
111	2P4W_A	202	57	98.1	7E-06	[ -------------- ]	Transcriptional regulatory protein arsR family; archaea, Phr, heat shock, transcriptional; 2.6A {Pyrococcus furiosus} SCOP: a.4.5.64
112	3Q5F_A	147	67	98.1	5.3E-06	[ ----------------- ]	Transcriptional regulator slyA; MarR/SlyA protein family, winged helix-turn-helix; 2.96A {Salmonella enterica}
113	1KU9_B	152	64	98.1	7.9E-06	[ ---------------- ]	hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix; 2.8A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
114	4A5N_A	131	63	98.1	5E-06	[ ---------------- ]	UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YYBR; TRANSCRIPTION, ACTIVATOR, DNA BINDING, MARR-LIKE; HET: BME; 1.81A {BACILLUS SUBTILIS}
115	3ELK_B	117	66	98.1	2.7E-06	[ ---------------- ]	Putative transcriptional regulator TA0346; transcriptional regulator, structural genomics, PSI-2; 1.7A {Thermoplasma acidophilum}
116	4PCQ_B	190	52	98.1	6.2E-06	[ ------------- ]	Possible transcriptional regulatory protein (Probably; Lrp, AsnC, Feast/famine regulatory protein; 2.95A {Mycobacterium tuberculosis}
117	1R1T_B	122	59	98.1	5.1E-06	[ --------------- ]	Transcriptional repressor smtB; transcriptional regulation, winged HTH protein; 1.7A {Synechococcus elongatus PCC 7942} SCOP: a.4.5.5
118	1R23_A	122	59	98.1	5.1E-06	[ --------------- ]	Transcriptional repressor smtB; DNA binding Transcriptional regulation, winged; 2.0A {Synechococcus elongatus PCC 7942} SCOP: a.4.5.5
119	1XMK_A	79	64	98.1	3.1E-06	[ ---------------- ]	Double-stranded RNA-specific adenosine deaminase (E.C.3.5.4.-); winged Helix-Turn-Helix, RNA editing, Interferon; 0.97A {Homo sapiens} SCOP: a.4.5.19
120	3BJA_A	139	67	98.1	3E-06	[ ----------------- ]	Transcriptional regulator, MarR family, putative; NP_978771.1, Putative MarR-like Transcription Regulator; 2.38A {Bacillus cereus}
121	2OBP_A	96	68	98.1	8.2E-06	[ ----------------- ]	Putative DNA-binding protein; Structural genomics, Joint Center for; 1.7A {Ralstonia eutropha} SCOP: a.4.5.71
122	4RS8_B	84	63	98.1	6.9E-06	[ --------------- ]	AspA; PadR family, DNA segregation, centromere; 2.29A {Sulfolobus sp. NOB8H2}
123	3B73_A	111	68	98.1	6.4E-06	[ ----------------- ]	PhiH1 repressor-like protein; winged-helix-turn-helix, Structural Genomics, PSI-2, Protein; HET: SO4; 2.12A {Haloarcula marismortui ATCC 43049}
124	2ISY_A	157	65	98.1	5.6E-06	[ ---------------- ]	Iron-dependent repressor ideR; DNA-binding protein, TRANSCRIPTION; HET: PO4; 1.955A {Mycobacterium tuberculosis} SCOP: a.4.5.24, a.76.1.1
125	3ZMD_C	178	67	98.1	5.4E-06	[ ----------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR; TRANSCRIPTION, MARR-FAMILY, WINGED HELIX MOTIF; HET: SAL, EDO; 1.95A {STREPTOMYCES COELICOLOR}
126	4PCQ_C	190	52	98.1	5.9E-06	[ ------------- ]	Possible transcriptional regulatory protein (Probably; Lrp, AsnC, Feast/famine regulatory protein; 2.95A {Mycobacterium tuberculosis}
127	3ELK_A	117	66	98.1	2.7E-06	[ ---------------- ]	Putative transcriptional regulator TA0346; transcriptional regulator, structural genomics, PSI-2; 1.7A {Thermoplasma acidophilum}
128	2IJL_B	135	65	98.1	6.2E-06	[ ----------------- ]	Molybdenum-binding transcriptional repressor; molybdenum-binding, transcriptional repressor, structural genomics; HET: EDO, SO4; 2.3A {Agrobacterium tumefaciens str.}
129	3F6O_A	118	61	98.1	5.1E-06	[ --------------- ]	Probable transcriptional regulator, ArsR family; ArsR family, transcriptional regulator,RHA00566,MCSG, Structural; 1.9A {Rhodococcus sp. RHA1}
130	2IJL_A	135	65	98.1	6.2E-06	[ ----------------- ]	Molybdenum-binding transcriptional repressor; molybdenum-binding, transcriptional repressor, structural genomics; HET: EDO, SO4; 2.3A {Agrobacterium tumefaciens str.}
131	4A5N_B	131	63	98.1	5E-06	[ ---------------- ]	UNCHARACTERIZED HTH-TYPE TRANSCRIPTIONAL REGULATOR YYBR; TRANSCRIPTION, ACTIVATOR, DNA BINDING, MARR-LIKE; HET: BME; 1.81A {BACILLUS SUBTILIS}
132	3CDH_B	155	67	98.1	6.8E-06	[ ----------------- ]	Transcriptional regulator, MarR family; MarR, HELIX-TURN-HLEIX, TRANSCRIPTIONAL REGULATOR, Structural; HET: SO4, GOL; 2.69A {Silicibacter pomeroyi DSS-3}
133	4YIF_B	164	67	98.1	8.2E-06	[ ----------------- ]	MarR family protein Rv0880; MarR family, DNA binding protein; 2.002A {Mycobacterium tuberculosis}
134	3ZMD_D	178	67	98.1	5.4E-06	[ ----------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR; TRANSCRIPTION, MARR-FAMILY, WINGED HELIX MOTIF; HET: SAL, EDO; 1.95A {STREPTOMYCES COELICOLOR}
135	3B73_B	111	68	98.1	6.4E-06	[ ----------------- ]	PhiH1 repressor-like protein; winged-helix-turn-helix, Structural Genomics, PSI-2, Protein; HET: SO4; 2.12A {Haloarcula marismortui ATCC 43049}
136	2HZT_B	107	63	98.1	5.5E-06	[ ---------------- ]	Putative HTH-type transcriptional regulator ytcD; DNA-binding protein, HTH-type transcription regulators; 2.0A {Bacillus subtilis} SCOP: a.4.5.69
137	2F5C_A	142	63	98.1	9.4E-06	[ ---------------- ]	Transcriptional regulator mntR; HELIX-TURN-HELIX, DNA-BINDING PROTEIN, METALLOREGULATORY PROTEIN; HET: SO4; 2.4A {Bacillus subtilis} SCOP: a.76.1.1, a.4.5.24
138	2HR3_C	147	67	98.1	5.9E-06	[ ----------------- ]	Probable transcriptional regulator; MCSG, Structural Genomics, PSI-2, Protein; 2.4A {Pseudomonas aeruginosa} SCOP: a.4.5.28
139	4RGU_A	162	67	98.1	8.1E-06	[ ----------------- ]	Repressor protein; Structural Genomics, PSI-Biology, Midwest Center; HET: GOL, FER; 1.891A {Acinetobacter sp. ADP1}
140	1XMA_B	145	65	98.1	3.7E-06	[ ---------------- ]	Predicted transcriptional regulator; Clostridium thermocellum, transcriptional regulator, Southeast; HET: UNX; 2.301A {Clostridium thermocellum} SCOP: a.4.5.61
141	4IHS_B	94	62	98.1	5.6E-06	[ ---------------- ]	HTH-type transcriptional regulator BenM/DNA Complex; wHTH, HTH, Transcriptional regulator, catB; HET: MLI; 3.1A {Acinetobacter sp.}
142	2ESH_A	118	67	98.1	1.9E-06	[ ----------------- ]	conserved hypothetical protein TM0937; TM0937, APC5794, Structural Genomics, PSI; 2.3A {Thermotoga maritima} SCOP: a.4.5.61
143	3F6O_B	118	61	98.1	5.1E-06	[ --------------- ]	Probable transcriptional regulator, ArsR family; ArsR family, transcriptional regulator,RHA00566,MCSG, Structural; 1.9A {Rhodococcus sp. RHA1}
144	4RGU_B	162	67	98.1	8.1E-06	[ ----------------- ]	Repressor protein; Structural Genomics, PSI-Biology, Midwest Center; HET: GOL, FER; 1.891A {Acinetobacter sp. ADP1}
145	3U2R_A	168	67	98.1	4E-06	[ ----------------- ]	Regulatory protein MarR; Structural Genomics, PSI-Biology, Midwest Center; 2.2A {Planctomyces limnophilus}
146	3HRS_A	214	62	98.1	5.2E-06	[ --------------- ]	Metalloregulator ScaR; DtxR/MntR family member, TRANSCRIPTION; HET: SO4; 2.7A {Streptococcus gordonii}
147	3NQO_A	189	65	98.1	9.8E-06	[ ---------------- ]	Crystal structure of a MarR; Structural Genomics, Joint Center for; HET: PG4, GOL; 2.2A {Clostridium difficile}
148	1FX7_B	230	65	98.1	7.4E-06	[ ---------------- ]	IRON-DEPENDENT REPRESSOR IDER; IdeR, DtxR, iron-dependent regulator, Mycobacterium; HET: CO, SO4; 2.0A {Mycobacterium tuberculosis} SCOP: a.4.5.24, a.76.1.1, b.34.1.2
149	2QVO_A	95	67	98.1	7.2E-06	[ ----------------- ]	Uncharacterized protein AF_1382; AF1382, Archaeoglobus fulgidus, PSI, STRUCTURAL; 1.85A {Archaeoglobus fulgidus DSM 4304}
150	3OV8_A	95	66	98.1	7.2E-06	[ ----------------- ]	Protein AF_1382; AF1382, PSI, STRUCTURAL GENOMICS, SOUTHEAST; 1.8501A {Archaeoglobus fulgidus}
151	1R7J_A	95	59	98.1	8.6E-06	[ --------------- ]	Conserved hypothetical protein Sso10a; Winged helix-turn-helix, two-stranded antiparallel coiled; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49
152	3L7W_A	108	66	98.1	4.5E-06	[ ---------------- ]	Putative uncharacterized protein SMU.1704; PadR, transcriptional factor, TRANSCRIPTION; 2.2A {Streptococcus mutans}
153	1SFX_A	109	65	98.0	1.7E-05	[ ---------------- ]	Conserved hypothetical protein AF2008; structural genomics, conserved hypothetical protein; HET: EDO; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
154	3M1E_A	94	62	98.0	5.6E-06	[ ---------------- ]	Crystal Structure of BenM_DBD; wHTH, Activator, Aromatic hydrocarbons catabolism; 1.8A {Acinetobacter sp. ADP1}
155	3KE2_A	117	56	98.0	7.1E-06	[ -------------- ]	uncharacterized protein YP_928783.1; STRUCTURAL GENOMICS, JOINT CENTER FOR; HET: NO3; 2.5A {Shewanella amazonensis SB2B}
156	1I1S_A	96	65	98.0	9.5E-06	[ ---------------- ]	MotA; MotNF, coiled-coil, crystal packing, transcription; NMR {Enterobacteria phage T4} SCOP: a.4.5.9
157	5AIP_A	146	67	98.0	9.5E-06	[ ----------------- ]	TRANSCRIPTIONAL REGULATOR, MARR FAMILY; CELL ADHESION, VACCINE, MENINGITIS, TRANSCRIPTION; HET: MSE, 4HP; 2.3A {NEISSERIA MENINGITIDIS SEROGROUP B}
158	3S2W_A	159	67	98.0	6.7E-06	[ ----------------- ]	Transcriptional regulator, MarR family; structural genomics, PSI-Biology, protein structure; HET: SO4; 2.453A {Methanosarcina mazei}
159	2D1H_B	109	54	98.0	1.7E-05	[ ------------- ]	109aa long hypothetical transcriptional regulator; HELIX-TURN-HELIX, INTERMOLECULAR AND INTRAMOLECULAR S-S; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
160	2HR3_D	147	67	98.0	5.9E-06	[ ----------------- ]	Probable transcriptional regulator; MCSG, Structural Genomics, PSI-2, Protein; 2.4A {Pseudomonas aeruginosa} SCOP: a.4.5.28
161	4YIF_A	164	67	98.0	8.2E-06	[ ----------------- ]	MarR family protein Rv0880; MarR family, DNA binding protein; 2.002A {Mycobacterium tuberculosis}
162	2QQ9_A	226	64	98.0	8E-06	[ ---------------- ]	Diphtheria toxin repressor; REPRESSOR, REGULATOR, DTXR, HELIX-TURN-HELIX, METAL; 1.71A {Corynebacterium diphtheriae}
163	2FBI_A	142	66	98.0	8.6E-06	[ ---------------- ]	probable transcriptional regulator; MarR, transcriptional regulator, APC5816, Structural; 2.1A {Pseudomonas aeruginosa} SCOP: a.4.5.28
164	3S2W_E	159	67	98.0	6.7E-06	[ ----------------- ]	Transcriptional regulator, MarR family; structural genomics, PSI-Biology, protein structure; HET: SO4; 2.453A {Methanosarcina mazei}
165	2GQQ_B	163	68	98.0	3E-06	[ ----------------- ]	Leucine-responsive regulatory protein; helix-turn-helix, TRANSCRIPTION; 3.2A {Escherichia coli}
166	1XSX_B	95	60	98.0	8.6E-06	[ --------------- ]	Sso10a; winged helix-turn-helix, anti-parallel coiled coil; NMR {Sulfolobus solfataricus} SCOP: a.4.5.49
167	2V7F_A	150	62	98.0	4.9E-06	[ --------------- ]	RPS19E SSU RIBOSOMAL PROTEIN S19E; DIAMOND BLACKFAN ANEMIA SMALL RIBOSOMAL; 1.15A {PYROCOCCUS ABYSSI} SCOP: a.4.5.84
168	3HSR_D	140	67	98.0	7.2E-06	[ ----------------- ]	HTH-type transcriptional regulator sarZ; helix-turn-helix, cysteine disulfide, MarR-family transcriptional; HET: BT6, ACT, GOL; 1.9A {Staphylococcus aureus subsp. aureus}
169	2LKP_A	119	64	98.0	8.2E-06	[ ---------------- ]	Transcriptional regulator, ArsR family; symmetric homodimer, Ni(II) binding protein; NMR {Mycobacterium tuberculosis}
170	4NB5_B	171	66	98.0	8.4E-06	[ ----------------- ]	DNA binding protein; DNA binding, DNA BINDING PROTEIN; HET: 2JT; 1.641A {Mycobacterium tuberculosis}
171	3DF8_A	111	68	98.0	8.5E-06	[ ----------------- ]	possible HxlR family transcriptional factor; APC89000, HxlR, transcriptional factor, structural; 1.65A {Thermoplasma volcanium}
172	4ESB_A	115	64	98.0	8.8E-06	[ ---------------- ]	Transcriptional regulator, PadR family; PadR family, transcriptional regulator, DNA; HET: GOL; 2.5A {Bacillus cereus}
173	4NB5_D	171	66	98.0	8.4E-06	[ ----------------- ]	DNA binding protein; DNA binding, DNA BINDING PROTEIN; HET: 2JT; 1.641A {Mycobacterium tuberculosis}
174	2CFX_C	144	48	98.0	1.8E-05	[ ------------ ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR LRPC; TRANSCRIPTION, LRPC, TRANSCRIPTIONAL REGULATION, DNA; 2.4A {BACILLUS SUBTILIS} SCOP: a.4.5.32, d.58.4.2
175	3ZPL_A	177	67	98.0	1E-05	[ ----------------- ]	PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR; TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION, WINGED HELIX; HET: PO4; 2.8A {STREPTOMYCES COELICOLOR}
176	3ZPL_E	177	67	98.0	1E-05	[ ----------------- ]	PUTATIVE MARR-FAMILY TRANSCRIPTIONAL REPRESSOR; TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION, WINGED HELIX; HET: PO4; 2.8A {STREPTOMYCES COELICOLOR}
177	5HSN_A	160	67	98.0	1.6E-05	[ ----------------- ]	Uncharacterized HTH-type transcriptional regulator Rv2887; HTH-TYPE TRANSCRIPTIONAL REGULATOR, DNA BINDING; HET: SAL, SO4; 2.4A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
178	2D1H_A	109	54	98.0	1.7E-05	[ ------------- ]	109aa long hypothetical transcriptional regulator; HELIX-TURN-HELIX, INTERMOLECULAR AND INTRAMOLECULAR S-S; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
179	4GXO_A	140	67	98.0	7.5E-06	[ ----------------- ]	MarR family regulatory protein; transcriptional regulator, TRANSCRIPTION; HET: GOL; 2.05A {Staphylococcus aureus}
180	2FE3_B	145	62	98.0	2.3E-05	[ --------------- ]	Peroxide operon regulator; Oxidative stress regulator, DNA binding; 1.75A {Bacillus subtilis}
181	5FMF_R	160	54	98.0	1.2E-05	[ -------------- ]	DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}
182	2FBK_B	181	67	98.0	3.4E-06	[ ----------------- ]	transcriptional regulator, MarR family; winged-helix-turn-helix, TRANSCRIPTION; 2.3A {Deinococcus radiodurans} SCOP: a.4.5.28
183	3BPV_A	138	67	98.0	1.5E-05	[ ----------------- ]	Transcriptional regulator; MarR, DNA binding, transcription factor; 1.4A {Methanobacterium thermoautotrophicum}
184	1SFX_B	109	64	98.0	2.3E-05	[ ---------------- ]	Conserved hypothetical protein AF2008; structural genomics, conserved hypothetical protein; HET: EDO; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
185	3DEU_A	166	67	98.0	1.9E-05	[ ----------------- ]	Transcriptional regulator slyA; SlyA, MarR, salmonella, wing-helix, transcription; HET: SAL; 2.3A {Salmonella typhimurium} SCOP: a.4.5.28
186	4CZD_A	173	50	98.0	1.7E-05	[ ------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY; LYASE; 2.23A {DESULFOVIBRIO DESULFURICANS}
187	2FE3_A	145	62	98.0	2.3E-05	[ --------------- ]	Peroxide operon regulator; Oxidative stress regulator, DNA binding; 1.75A {Bacillus subtilis}
188	4KA4_A	70	45	98.0	6.9E-06	[ ----------- ]	Z-DNA-binding protein 1/DNA; wHTH, DNA sensor, Z-DNA binding; 2.6A {Homo sapiens}
189	1JMR_.	249	57	98.0	1.7E-05	[ -------------- ]	IclR Transcriptional Regulator; winged helix-turn-helix; 2.2A {Thermotoga maritima}
190	4KMF_A	62	51	98.0	1.5E-05	[ ------------- ]	Interferon-inducible and double-stranded-dependent eIF-2kinase/DNA complex; Zalpha, Z-DNA, PKZ, goldfish, TRANSFERASE-DNA; 1.7A {Carassius auratus}
191	2MLG_A	84	50	98.0	2.9E-05	[ ------------ ]	Stf76; winged helix domain, DNA BINDING; NMR {Fuselloviridae}
192	5TRD_A	230	66	98.0	7.4E-06	[ ---------------- ]	Riboflavin kinase/DNA Complex; ribflavin kinase, MarR type regulatory; HET: CTP; 1.85A {Thermoplasma acidophilum}
193	3CJN_A	162	67	98.0	1.5E-05	[ ----------------- ]	Transcriptional regulator, MarR family; Transcriptional regulator, MarR family, Silicibacter; 1.95A {Silicibacter pomeroyi DSS-3}
194	3E6M_D	161	67	98.0	1.6E-05	[ ----------------- ]	MarR family Transcriptional regulator; APC88769, MarR, Silicibacter pomeroyi DSS; 2.2A {Silicibacter pomeroyi}
195	1MKM_B	249	57	98.0	1.7E-05	[ -------------- ]	IclR transcriptional regulator; STRUCTURAL GENOMICS, WINGED HELIX-TURN-HELIX, PSI; 2.2A {Thermotoga maritima} SCOP: a.4.5.33, d.110.2.2
196	1TBX_A	99	66	98.0	8.5E-06	[ ---------------- ]	Hypothetical 11.0 kDa protein; Sulfolobus Spindle Virus, Winged Helix; 2.7A {Sulfolobus virus 1} SCOP: a.4.5.48
197	5JBR_B	149	67	98.0	1.5E-05	[ ----------------- ]	Uncharacterized protein Bcav_2135; Structural Genomics, PSI-Biology, Midwest Center; HET: MSE, SO4; 1.65A {Beutenbergia cavernae}
198	5JBR_A	149	67	98.0	1.5E-05	[ ----------------- ]	Uncharacterized protein Bcav_2135; Structural Genomics, PSI-Biology, Midwest Center; HET: SO4, MSE; 1.65A {Beutenbergia cavernae}
199	2IA2_A	265	60	98.0	1E-05	[ --------------- ]	Putative Transcriptional Regulator; SAD, Transcriptional Regulator, PSI-2, Structural; 2.1A {Rhodococcus sp.}
200	2F2E_A	146	63	98.0	1.4E-05	[ ---------------- ]	PA1607; Transcription factor, helix-trun-helix, APC5613, structural; HET: SO4, GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
201	2FA5_B	162	67	98.0	1.6E-05	[ ----------------- ]	transcriptional regulator marR/emrR family; MarR, multiple antibiotics resistance repressor; 1.8A {Xanthomonas campestris}
202	2VN2_A	128	67	98.0	1.4E-05	[ ----------------- ]	CHROMOSOME REPLICATION INITIATION PROTEIN; DNAD, DNA REPLICATION, PRIMOSOME, REPLICATION; 2.3A {GEOBACILLUS KAUSTOPHILUS HTA426}
203	4UN1_C	173	50	98.0	1.7E-05	[ ------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY; OXIDOREDUCTASE; HET: OBV; 1.97A {DESULFOVIBRIO DESULFURICANS}
204	1R1U_C	106	61	98.0	1.9E-05	[ --------------- ]	repressor protein; DNA binding, Transcriptional regulation, winged; 2.0A {Staphylococcus aureus} SCOP: a.4.5.5
205	5FD5_B	141	62	98.0	2.8E-05	[ --------------- ]	Manganese responsive transcriptional regulator member; fur, ferric uptake regulator, apo; HET: EDO, SO4; 1.91A {Rhizobium leguminosarum bv. viciae}
206	5FD5_A	141	62	98.0	2.8E-05	[ --------------- ]	Manganese responsive transcriptional regulator member; fur, ferric uptake regulator, apo; HET: EDO, SO4; 1.91A {Rhizobium leguminosarum bv. viciae}
207	3JAH_ZZ	75	51	98.0	2.1E-05	[ ------------ ]	uL2, uL3, uL4, uL18, eL6; termination, eRF1, ABCE1, RIBOSOME; HET: SF4, MG, ADP; 3.45A {Oryctolagus cuniculus}
208	5HSM_A	160	67	98.0	1.6E-05	[ ----------------- ]	Uncharacterized HTH-type transcriptional regulator Rv2887; HTH-TYPE TRANSCRIPTIONAL REGULATOR, DNA BINDING; HET: SO4; 1.9A {Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)}
209	4RBR_A	139	67	98.0	1.6E-05	[ ----------------- ]	HTH-type transcriptional regulator rot; Winged-Helix-Turn-Helix, Virulence Regulator, DNA Binding; 1.7A {Staphylococcus aureus subsp. aureus CN1}
210	2DBB_B	151	52	98.0	2.7E-05	[ ------------- ]	Putative HTH-type transcriptional regulator PH0061; AsnC family, helix-turn-helix (HTH) domain; 2.0A {Pyrococcus horikoshii}
211	4RAY_B	145	62	98.0	3.2E-05	[ --------------- ]	DNA-binding transcriptional dual regulator of; ferric uptake regulator (FUR), metal; HET: FLC, SO4; 1.55A {Magnetospirillum gryphiswaldense}
212	5TRD_B	230	66	98.0	7.4E-06	[ ---------------- ]	Riboflavin kinase/DNA Complex; ribflavin kinase, MarR type regulatory; HET: CTP; 1.85A {Thermoplasma acidophilum}
213	2W25_B	150	49	98.0	2E-05	[ ------------ ]	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN; TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTIONAL REGULATOR; 2.15A {MYCOBACTERIUM TUBERCULOSIS}
214	4GGG_B	105	60	98.0	1.7E-05	[ --------------- ]	Repressor protein; Zn(II) binding protein, transcriptional regulator; 1.998A {Staphylococcus aureus subsp. aureus}
215	2CG4_B	152	49	98.0	2.3E-05	[ ------------ ]	REGULATORY PROTEIN ASNC; ASNC, DNA BINDING, FFRP, LRP; HET: ASN; 2.4A {ESCHERICHIA COLI} SCOP: a.4.5.32, d.58.4.2
216	3TGN_A	146	67	98.0	2.6E-05	[ ----------------- ]	Adc operon repressor AdcR; Helix-turn-Helix, Transcriptional regulator, TRANSCRIPTION; 2.0A {Streptococcus pneumoniae}
217	2G7U_A	257	61	97.9	1.7E-05	[ --------------- ]	transcriptional regulator; Transcriptional regulator, IclR family, structural; 2.3A {Rhodococcus sp.}
218	2L4A_A	66	53	97.9	3E-05	[ ------------- ]	Leucine responsive regulatory protein; DNA BINDING PROTEIN; NMR {Escherichia coli}
219	5FFX_D	161	67	97.9	1.5E-05	[ ----------------- ]	MarR family regulatory protein; Winged helix-turn-helix, DNA binding protein; HET: GOL, SO4; 1.47A {Staphylococcus aureus}
220	1YYV_A	131	64	97.9	1.5E-05	[ ---------------- ]	putative transcriptional regulator; putative transcriptional regulator, reductive methylation; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
221	1MZB_A	136	62	97.9	3.1E-05	[ --------------- ]	Ferric uptake regulation protein; ferric uptake regulator, iron, dtxr; 1.8A {Pseudomonas aeruginosa} SCOP: a.4.5.42
222	4O5V_A	239	67	97.9	1.2E-05	[ ----------------- ]	Iron-dependent transcription repressor related protein; IdeR, METAL BINDING PROTEIN; 2.1A {Thermoplasma acidophilum}
223	2OQG_B	114	59	97.9	2.1E-05	[ --------------- ]	Possible transcriptional regulator, ArsR family; winged-helix-turn-helix, Structural Genomics, PSI-2, Protein; HET: ACY; 1.54A {Rhodococcus sp.}
224	4O6J_A	239	67	97.9	1.2E-05	[ ----------------- ]	Iron-dependent transcription repressor related protein; Irod dependent transcription factor, Fe; 2.3A {Thermoplasma acidophilum}
225	2P8T_A	200	66	97.9	1.2E-05	[ ----------------- ]	Hypothetical protein PH0730; hypothetical protein, PH0730, Pyrococcus horikoshii; 1.8A {Pyrococcus horikoshii} SCOP: a.4.5.72, d.74.4.2
226	1U2W_A	122	61	97.9	2.6E-05	[ --------------- ]	Cadmium efflux system accessory protein; cadmium, lead, repressor, soft metal; 1.9A {Staphylococcus aureus} SCOP: a.4.5.5
227	4B8X_B	147	67	97.9	1.8E-05	[ ----------------- ]	POSSIBLE MARR-TRANSCRIPTIONAL REGULATOR; TRANSCRIPTION, WINGED HELIX MOTIF; 1.25A {STREPTOMYCES COELICOLOR}
228	2OQG_D	114	59	97.9	2.1E-05	[ --------------- ]	Possible transcriptional regulator, ArsR family; winged-helix-turn-helix, Structural Genomics, PSI-2, Protein; HET: ACY; 1.54A {Rhodococcus sp.}
229	5DD8_A	181	67	97.9	7.7E-06	[ ----------------- ]	Transcriptional regulator, MarR family; HucR, Transcription factor, MarR, Transcription; 2.05A {Deinococcus radiodurans}
230	4B8X_A	147	67	97.9	1.8E-05	[ ----------------- ]	POSSIBLE MARR-TRANSCRIPTIONAL REGULATOR; TRANSCRIPTION, WINGED HELIX MOTIF; 1.25A {STREPTOMYCES COELICOLOR}
231	2FXA_A	207	67	97.9	1.6E-05	[ ----------------- ]	Protease production regulatory protein hpr; Bacillus subtilis, hpr, protease porduction; HET: PGE, EDO, MSE, 1PE, P6G; 2.4A {Bacillus subtilis} SCOP: a.4.5.28
232	2XIG_D	150	62	97.9	3.9E-05	[ --------------- ]	FERRIC UPTAKE REGULATION PROTEIN; HPFUR, TRANSCRIPTION, HOMEOSTASIS; HET: CIT, ZN; 1.85A {HELICOBACTER PYLORI}
233	2CWE_A	192	54	97.9	3.4E-05	[ -------------- ]	hypothetical transcription regulator protein, PH1932; Structural Genomics, hypothecital protein, transcription; 2.7A {Pyrococcus horikoshii} SCOP: a.4.5.58
234	2FXA_B	207	67	97.9	1.6E-05	[ ----------------- ]	Protease production regulatory protein hpr; Bacillus subtilis, hpr, protease porduction; HET: 1PE, PGE, P6G, MSE, EDO; 2.4A {Bacillus subtilis} SCOP: a.4.5.28
235	5DUK_B	77	52	97.9	4.1E-05	[ ------------- ]	putative DNA binding protein; Structural Genomics, PSI-Biology, Midwest Center; HET: MSE; 2.352A {Thermoplasmatales archaeon SCGC AB-539-N05}
236	1HSJ_B	487	67	97.9	1.7E-05	[ ----------------- ]	FUSION PROTEIN CONSISTING OF STAPHYLOCOCCUS; Novel fold for DNA binding; HET: GLC; 2.3A {Escherichia coli, Staphylococcus aureus} SCOP: c.94.1.1, a.4.5.28
237	2W57_B	150	62	97.9	2.7E-05	[ --------------- ]	FERRIC UPTAKE REGULATION PROTEIN; GENE REGULATION, VIBRIO CHOLERAE, TRANSCRIPTION; 2.6A {VIBRIO CHOLERAE}
238	3TGN_B	146	67	97.9	3E-05	[ ----------------- ]	Adc operon repressor AdcR; Helix-turn-Helix, Transcriptional regulator, TRANSCRIPTION; 2.0A {Streptococcus pneumoniae}
239	2JSC_B	118	59	97.9	1.5E-05	[ --------------- ]	Transcriptional regulator Rv1994c/MT2050; CADMIUM, TRANSCRIPTIONAL REPRESSOR, SOLUTION STRUCTURE; HET: CD; NMR {Mycobacterium tuberculosis}
240	1ULY_A	192	54	97.9	3.4E-05	[ -------------- ]	hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA BINDING; 2.5A {Pyrococcus horikoshii} SCOP: a.4.5.58
241	2XIG_C	150	62	97.9	3.9E-05	[ --------------- ]	FERRIC UPTAKE REGULATION PROTEIN; HPFUR, TRANSCRIPTION, HOMEOSTASIS; HET: ZN, CIT; 1.85A {HELICOBACTER PYLORI}
242	1YG2_A	179	62	97.9	2.1E-05	[ --------------- ]	gene activator AphA; virulence factor vibrio cholerae; 2.2A {Vibrio cholerae} SCOP: a.4.5.61
243	4RB3_C	145	62	97.9	5.3E-05	[ --------------- ]	PROTEIN/DNA Complex; ferric uptake regulator (FUR), metal; 2.6A {Magnetospirillum gryphiswaldense}
244	2YU3_A	95	55	97.9	3E-05	[ -------------- ]	DNA-directed RNA polymerase III 39; Winged Helix domain, RNA POLYMERASE; NMR {Homo sapiens}
245	3BOQ_A	160	67	97.9	1.3E-05	[ ----------------- ]	Transcriptional regulator, MarR family; Silicibacter pomeroyi, transcriptional regulator, MarR; 2.39A {Silicibacter pomeroyi DSS-3}
246	4MQV_C	69	53	97.9	5.8E-05	[ ------------- ]	Replication protein A 32 kDa; Winged HTH Fold, Protein Binding; 1.95A {Homo sapiens}
247	2FSW_B	107	64	97.9	1.6E-05	[ ---------------- ]	hypothetical protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-heix, Structural; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
248	3BOQ_B	160	67	97.9	1.3E-05	[ ----------------- ]	Transcriptional regulator, MarR family; Silicibacter pomeroyi, transcriptional regulator, MarR; 2.39A {Silicibacter pomeroyi DSS-3}
249	2O0Y_C	260	60	97.9	2E-05	[ --------------- ]	Crystal structure, Putative transcriptional regualtor; TRANSCRIPTIONAL REGULATOR, Iclr-Family, Structural Genomics; 2.0A {Rhodococcus sp.}
250	2E1N_B	138	67	97.9	2.4E-05	[ ----------------- ]	Pex; circadian clock, DNA BINDING PROTEIN; HET: SO4; 1.8A {Synechococcus elongatus PCC 7942}
251	2H09_A	155	59	97.9	2.9E-05	[ --------------- ]	Transcriptional regulator mntR; Transcription regulator, diphtheria toxin, manganese; 2.1A {Escherichia coli}
252	2QLZ_B	232	53	97.9	2.6E-05	[ ------------- ]	Transcription Factor PF0095; Transcription factor, TRANSCRIPTION; 2.5A {Pyrococcus furiosus}
253	2XRN_A	241	60	97.9	2.9E-05	[ --------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV; DNA-BINDING PROTEIN, TETRAMER GENE REGULATOR; 2.9A {PSEUDOMONAS PUTIDA}
254	2XRN_B	241	60	97.9	2.9E-05	[ --------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR TTGV; DNA-BINDING PROTEIN, TETRAMER GENE REGULATOR; 2.9A {PSEUDOMONAS PUTIDA}
255	4CH7_A	342	50	97.9	2.7E-05	[ ------------- ]	NIRD-LIKE PROTEIN; TRANSCRIPTION, BIFUNCTIONAL ENZYME, TRANSCRIPTIONAL REGULATOR; 2.002A {HYDROGENOBACTER THERMOPHILUS}
256	2K4B_A	99	57	97.9	8.6E-06	[ -------------- ]	Transcriptional regulator; DNA binding protein, Winged Helix; NMR {Lactococcus lactis subsp. lactis}
257	5TBW_a	70	46	97.9	2.9E-05	[ ----------- ]	?; Protein translation inhibitor, complex, ribosome; HET: MG, 7AL, OHX, ZN; 3.0A {Saccharomyces cerevisiae}
258	4LMY_A	163	61	97.9	5.6E-05	[ --------------- ]	Peroxide stress regulator PerR, FUR; Transcription Factor, Zinc Binding, Transcription; 1.6A {Streptococcus pyogenes}
259	4K2E_B	112	60	97.9	3.3E-05	[ --------------- ]	Transcriptional activator HlyU; Winged helix, DNA-binding domain, Hemolysin; 1.8A {Vibrio cholerae}
260	2CYY_A	151	49	97.9	5.1E-05	[ ------------ ]	Putative HTH-type transcriptional regulator PH1519; structural genomics, Pyrococcus horikosii OT3; HET: GLN; 1.8A {Pyrococcus horikoshii} SCOP: d.58.4.2, a.4.5.32
261	1Z7U_A	112	64	97.9	2.4E-05	[ ---------------- ]	hypothetical protein EF0647; winged-helix-turn-helix, MarR, Structural Genomics, PSI; 2.2A {Enterococcus faecalis} SCOP: a.4.5.69
262	4LMY_B	163	61	97.8	5.6E-05	[ --------------- ]	Peroxide stress regulator PerR, FUR; Transcription Factor, Zinc Binding, Transcription; 1.6A {Streptococcus pyogenes}
263	3MQ0_B	275	59	97.8	3.7E-05	[ --------------- ]	Transcriptional repressor of the blcABC; helix-turn-helix, GAF fold, Transcription repressor; 1.793A {Agrobacterium tumefaciens}
264	3R4K_A	260	59	97.8	1.8E-05	[ -------------- ]	Transcriptional regulator, IclR family; DNA/RNA-binding 3-helical bundle, Profilin-like, Structural; HET: EDO; 2.46A {Ruegeria sp. TM1040}
265	3CUO_B	99	60	97.8	4.4E-05	[ --------------- ]	Uncharacterized HTH-type transcriptional regulator ygaV; DNA-binding transcriptional regulator, Structural genomics; 2.0A {Escherichia coli K12}
266	4I98_B	183	64	97.8	2.7E-05	[ ----------------- ]	Segregation and condensation protein A; ScpA, ScpB, DNA condensation, SMC; 2.8A {Streptococcus pneumoniae}
267	2ZKZ_D	99	57	97.8	4.1E-05	[ -------------- ]	Transcriptional repressor pagR; transcriptional repressor, protein-DNA, HTH motif; 2.0A {Bacillus anthracis}
268	4HQE_B	115	63	97.8	1.8E-05	[ ---------------- ]	Transcriptional regulator QsrR/DNA complex; Transcriptional regulator, DNA, TRANSCRIPTION-DNA complex; 2.299A {Staphylococcus aureus}
269	5HS7_A	110	63	97.8	3.1E-05	[ ---------------- ]	HTH-type transcriptional regulator YodB; HTH-type transcriptional regulator, reduced form; 1.7A {Bacillus subtilis}
270	4OOI_B	112	61	97.8	3.2E-05	[ --------------- ]	Transcriptional activator HlyU; Winged helix, DNA-binding domain, Hemolysin; 2.2A {Vibrio cholerae}
271	3R0A_B	123	53	97.8	7.8E-05	[ ------------- ]	Putative transcriptional regulator; Structural Genomics, PSI-Biology, Midwest Center; 2.31A {Methanosarcina mazei}
272	5HS5_A	121	67	97.8	4.4E-05	[ ----------------- ]	HTH-type transcriptional regulator SarX; Staphylococcus aureus, SarX, Virulence Regulator; HET: MSE; 2.55A {Staphylococcus aureus subsp. aureus USA300}
273	5TJJ_A	260	59	97.8	4.3E-05	[ -------------- ]	Peptidase M14, carboxypeptidase A; Structural Genomics, PSI-Biology, Midwest Center; HET: MSE; 2.5A {Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 / 104-1A)}
274	1Q1H_A	110	53	97.8	4.1E-05	[ ------------- ]	Transcription Factor E; TFE, TFIIE, transcription initiation, preinitiation; 2.9A {Sulfolobus solfataricus} SCOP: a.4.5.41
275	1B9M_A	265	66	97.8	4.8E-05	[ ----------------- ]	ModE (MOLYBDATE-DEPENDENT TRANSCRIPTIONAL REGULATOR); DNA-BINDING, GENE REGULATION, WINGED HELIX; 1.75A {Escherichia coli} SCOP: b.40.6.2, a.4.5.8
276	2O0M_A	345	65	97.8	5.8E-06	[ ---------------- ]	Transcriptional regulator, SorC family; SorC family, transcriptional regulator, Structural; HET: PO4; 1.6A {Enterococcus faecalis} SCOP: c.124.1.8
277	5IT7_Z	70	45	97.8	8.3E-05	[ ----------- ]	KLLA0D16027p, 60S ribosomal protein L3; ribosome, translocation, IRES, eEF2; HET: 6EM, MG, GCP; 3.6A {Kluyveromyces lactis}
278	4G6Q_B	182	68	97.8	4.3E-05	[ ----------------- ]	Uncharacterized protein; structural genomics, PSI-Biology, protein structure; HET: SO4; 2.08A {Kribbella flavida}
279	4G6Q_A	182	67	97.8	4.3E-05	[ ----------------- ]	Uncharacterized protein; structural genomics, PSI-Biology, protein structure; HET: SO4; 2.08A {Kribbella flavida}
280	2V79_B	135	67	97.8	4.8E-05	[ ----------------- ]	DNA REPLICATION PROTEIN DNAD; PRIMOSOME, DNA-BINDING PROTEIN; HET: CL; 2.0A {BACILLUS SUBTILIS}
281	4HW0_A	104	60	97.8	3.9E-05	[ --------------- ]	DNA-binding protein Sso10a-2; Winged-helix, DNA-binding domain, two-stranded antiparallel; 2.0A {Sulfolobus solfataricus}
282	2IA2_B	265	60	97.8	1E-05	[ --------------- ]	Putative Transcriptional Regulator; SAD, Transcriptional Regulator, PSI-2, Structural; 2.1A {Rhodococcus sp.}
283	2ZKZ_C	99	57	97.8	4.1E-05	[ -------------- ]	Transcriptional repressor pagR; transcriptional repressor, protein-DNA, HTH motif; 2.0A {Bacillus anthracis}
284	4UN1_B	179	51	97.7	6.2E-05	[ ------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY; OXIDOREDUCTASE; HET: OBV; 1.97A {DESULFOVIBRIO DESULFURICANS}
285	4UN1_D	179	51	97.7	6.2E-05	[ ------------- ]	PUTATIVE TRANSCRIPTIONAL REGULATOR, ASNC FAMILY; OXIDOREDUCTASE; HET: OBV; 1.97A {DESULFOVIBRIO DESULFURICANS}
286	3EYY_B	145	61	97.7	7.5E-05	[ --------------- ]	Putative iron uptake regulatory protein; Nur, nickel-uptake regulator, D-domain, dimerization; HET: EDO, MLI; 2.4A {Streptomyces coelicolor}
287	5J6X_A	72	52	97.7	9.9E-05	[ ------------- ]	Z-DNA binding protein kinase; PKZ ZDNA Zalpha wHTH, DNA; 2.493A {Danio rerio}
288	3F72_B	122	60	97.7	6.7E-05	[ --------------- ]	CadC Dimerization Double Mutant; Cadmium repressor protein, zinc binding; 2.31A {Staphylococcus aureus}
289	2O03_A	131	55	97.7	3.8E-05	[ -------------- ]	probable Zinc uptake regulation protein; Zinc uptake, DNA-binding, helix-turn-helix, Zinc; 2.699A {Mycobacterium tuberculosis}
290	1QBJ_C	81	60	97.7	5.6E-05	[ --------------- ]	DOUBLE-STRANDED RNA SPECIFIC ADENOSINE DEAMINASE; PROTEIN-Z-DNA COMPLEX, HYDROLASE-DNA COMPLEX; 2.1A {Homo sapiens} SCOP: a.4.5.19
291	2RKH_A	180	67	97.7	1.1E-05	[ ----------------- ]	Putative AphA-like transcription factor; ZP_00208345.1, Putative AphA-like Transcription Factor; 2.0A {Magnetospirillum magnetotacticum}
292	4CH7_A	342	47	97.7	3.9E-05	[ ------------ ]	NIRD-LIKE PROTEIN; TRANSCRIPTION, BIFUNCTIONAL ENZYME, TRANSCRIPTIONAL REGULATOR; 2.002A {HYDROGENOBACTER THERMOPHILUS}
293	2HTJ_A	81	59	97.7	0.0001	[ --------------- ]	P fimbrial regulatory protein KS71A; winged helix-turn-helix, pap pili, TRANSCRIPTION; NMR {Escherichia coli} SCOP: a.4.5.73
294	4LB6_B	72	53	97.7	0.00013	[ ------------- ]	Protein kinase containing Z-DNA binding; wHTH, Zalpha, ZBD, Kinase, innate; 1.8A {Danio rerio}
295	3MWM_A	139	62	97.7	5.4E-05	[ ---------------- ]	Putative metal uptake regulation protein; Fur, Zur, regulatory metal, graded; 2.4A {Streptomyces coelicolor}
296	3L9F_A	204	66	97.7	1.6E-05	[ ---------------- ]	Putative uncharacterized protein smu.1604c; PadR, TRANSCRIPTION REGULATOR; 1.8A {Streptococcus mutans}
297	4ETS_B	162	62	97.7	4.8E-05	[ --------------- ]	Ferric uptake regulation protein; metal binding protein, transcription factor; 2.1A {Campylobacter jejuni subsp. jejuni}
298	4OMZ_C	118	53	97.7	7E-05	[ ------------- ]	NolR; helix-turn-helix, transcription regulator, TRANSCRIPTION; HET: PO4; 2.64A {Sinorhizobium fredii}
299	4OMZ_D	118	53	97.7	7E-05	[ ------------- ]	NolR; helix-turn-helix, transcription regulator, TRANSCRIPTION; HET: PO4; 2.64A {Sinorhizobium fredii}
300	1J5Y_A	187	59	97.7	9E-05	[ --------------- ]	TRANSCRIPTIONAL REGULATOR, BIOTIN REPRESSOR FAMILY; STRUCTURAL GENOMICS, TM1602, TRANSCRIPTIONAL REGULATOR; 2.3A {Thermotoga maritima} SCOP: d.94.2.1, a.4.5.1
301	3I71_B	68	54	97.7	7.8E-05	[ -------------- ]	Ethanolamine utilization protein eutK; helix-turn-helix, UNKNOWN FUNCTION; HET: FLC; 2.1A {Escherichia coli}
302	2Y75_F	129	60	97.7	0.00016	[ --------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR CYMR; TRANSCRIPTION, DNA BINDING PROTEIN; HET: SO4; 2.0A {BACILLUS SUBTILIS}
303	2Y75_B	129	60	97.7	0.00016	[ --------------- ]	HTH-TYPE TRANSCRIPTIONAL REGULATOR CYMR; TRANSCRIPTION, DNA BINDING PROTEIN; HET: SO4; 2.0A {BACILLUS SUBTILIS}
304	2QLZ_B	232	63	97.7	3.1E-05	[ ---------------- ]	Transcription Factor PF0095; Transcription factor, TRANSCRIPTION; 2.5A {Pyrococcus furiosus}
305	4MTE_D	171	61	97.7	0.00013	[ --------------- ]	Zinc uptake regulation protein; protein-DNA complex, winged-helix, DNA-binding regulatory; 2.5A {Escherichia coli}
306	2ACJ_C	66	56	97.7	9.7E-05	[ ------------- ]	DOUBLE-STRANDED RNA-SPECIFIC ADENOSINE DEAMINASE(E.C.3.5.4.-)/DNA complex; a B-Z juction, Protein-DNA complex; 2.6A {Homo sapiens} SCOP: a.4.5.19
307	1UB9_A	100	63	97.7	0.00014	[ ---------------- ]	Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
308	4HOB_D	69	52	97.6	0.00021	[ ------------- ]	Putative uncharacterized protein; Domain Swapping, Z-DNA binding domain; HET: SO4; 1.76A {Cyprinid herpesvirus 3}
309	1BM9_A	122	63	97.6	3.8E-05	[ ---------------- ]	REPLICATION TERMINATOR PROTEIN; DNA-BINDING PROTEIN, CONTRAHELICASE; 2.0A {Bacillus subtilis} SCOP: a.4.5.7
310	4HOB_C	69	52	97.6	0.00021	[ ------------- ]	Putative uncharacterized protein; Domain Swapping, Z-DNA binding domain; HET: SO4; 1.76A {Cyprinid herpesvirus 3}
311	5WHM_D	267	58	97.6	8.5E-05	[ -------------- ]	Beta-lactamase (E.C.3.5.2.6); helix-turn-helix, transcription factor, Chicago Center; HET: ACY, MSE; 1.95A {Brucella abortus}
312	1P4X_A	250	66	97.6	8.4E-05	[ ---------------- ]	staphylococcal accessory regulator A homologue; winged-helix protein, TRANSCRIPTION; 2.2A {Staphylococcus aureus} SCOP: a.4.5.28
313	2KKO_B	108	52	97.6	9.8E-05	[ ------------- ]	POSSIBLE TRANSCRIPTIONAL REGULATORY PROTEIN (POSSIBLY; NESG, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTIONAL; NMR {Mycobacterium bovis}
314	2VXZ_A	165	52	97.6	8.7E-05	[ ------------- ]	PYRSV_GP04; VIRAL PROTEIN, SSPF, ORF165A; 1.7A {PYROBACULUM SPHERICAL VIRUS}
315	5H1A_B	270	60	97.6	0.00012	[ --------------- ]	IclR transcription factor homolog; DNA-binding, TRANSCRIPTION REGULATOR; 2.1A {Microbacterium sp.}
316	3JTH_A	98	60	97.6	0.00015	[ --------------- ]	Transcription activator HlyU; transcription factor, HlyU, rtxA, DNA-binding; 2.0A {Vibrio vulnificus}
317	3GW2_A	108	52	97.6	9.8E-05	[ ------------- ]	Possible transcriptional regulatory arsR-family protein; Structural Genomics, PSI-2, Protein Structure; 2.1A {Mycobacterium bovis}
318	5WHM_C	267	58	97.6	8.5E-05	[ -------------- ]	Beta-lactamase (E.C.3.5.2.6); helix-turn-helix, transcription factor, Chicago Center; HET: ACY, MSE; 1.95A {Brucella abortus}
319	3JTH_B	98	60	97.6	0.00015	[ --------------- ]	Transcription activator HlyU; transcription factor, HlyU, rtxA, DNA-binding; 2.0A {Vibrio vulnificus}
320	1P4X_A	250	66	97.6	8.8E-05	[ ---------------- ]	staphylococcal accessory regulator A homologue; winged-helix protein, TRANSCRIPTION; 2.2A {Staphylococcus aureus} SCOP: a.4.5.28
321	2NRI_.	121	55	97.6	0.00019	[ -------------- ]	Replication protein O; WINGED HELIX, HELIX-TURN-HELIX, REPLICATION; 2.58A {Bacteriophage lambda}
322	3BY6_E	126	36	97.5	0.00027	[ --------- ]	Predicted transcriptional regulator; Transcriptional regulator, structural genomics, PSI-2; 2.2A {Oenococcus oeni}
323	3BY6_A	126	36	97.5	0.00027	[ --------- ]	Predicted transcriptional regulator; Transcriptional regulator, structural genomics, PSI-2; 2.2A {Oenococcus oeni}
324	1T6S_A	162	113	97.5	4.7E-05	[ --------------------------------- ]	conserved hypothetical protein; a winged helix-turn-helix, Structural Genomics; HET: NO3; 1.95A {Chlorobium tepidum TLS} SCOP: a.4.5.60
325	3JBO_2	68	43	97.5	0.00026	[ ----------- ]	PROTEIN/RNA Complex; RIBOSOME; 5.8A {Plasmodium falciparum 3D7}
326	2MH2_A	84	56	97.5	0.00017	[ -------------- ]	Homologous-pairing protein 2 homolog; meiosis, homologous recombination, homologous pairing; NMR {Mus musculus}
327	1QGP_A	77	48	97.5	0.00028	[ ----------- ]	ADENOSINE DEAMINASE ADAR1; Z-ALPHA-Z-DNA BINDING DOMAIN, RNA-EDITING, Z-DNA; NMR {Homo sapiens} SCOP: a.4.5.19
328	1STZ_B	338	67	97.5	0.00021	[ ----------------- ]	Heat-inducible transcription repressor hrcA homolog; Hrca, circe element, Structural Genomics; 2.2A {Thermotoga maritima} SCOP: a.4.5.51, d.110.2.3
329	1STZ_A	338	67	97.5	0.00021	[ ----------------- ]	Heat-inducible transcription repressor hrcA homolog; Hrca, circe element, Structural Genomics; 2.2A {Thermotoga maritima} SCOP: d.110.2.3, a.4.5.51
330	2B0L_A	102	54	97.5	0.0003	[ -------------- ]	GTP-sensing transcriptional pleiotropic repressor codY; CodY, DNA-binding Nucleotide-binding ; 2.9A {Bacillus subtilis} SCOP: a.4.5.66
331	4HF0_A	141	59	97.5	0.00033	[ -------------- ]	HTH-type transcriptional regulator IscR; wHTH, Protein-DNA Complex, Iron-Sulfur Cluster; 1.9A {Escherichia coli}
332	4R1H_A	128	44	97.4	0.00043	[ ----------- ]	Lmo0741 protein; structural genomics, APC106832, Winged helix-turn-helix; 1.76A {Listeria monocytogenes}
333	4R1H_B	128	44	97.4	0.00043	[ ----------- ]	Lmo0741 protein; structural genomics, APC106832, Winged helix-turn-helix; 1.76A {Listeria monocytogenes}
334	5GPY_A	220	51	97.4	0.00035	[ ------------- ]	General transcription factor IIE subunit; general transcription factor, RNA Polymerase; 2.1A {Homo sapiens}
335	2PG4_A	95	64	97.4	5.2E-05	[ ---------------- ]	Uncharacterized protein; Structural genomics, Joint Center for; HET: EDO, CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
336	2Z99_A	219	64	97.4	0.00022	[ ----------------- ]	Putative uncharacterized protein; winged helix domain, Cell cycle; 2.3A {Mycobacterium tuberculosis}
337	4IJA_A	397	62	97.4	0.00052	[ ---------------- ]	XylR protein; ROK family protein, protein binding; HET: GOL; 2.1A {Staphylococcus aureus subsp. aureus}
338	5LOE_A	262	60	97.4	0.00045	[ --------------- ]	GTP-sensing transcriptional pleiotropic repressor CodY; GAF, wHTH, transcriptional regulator, CodY; HET: ILE; 3.0A {Bacillus subtilis (strain 168)}
339	4IJA_B	397	62	97.4	0.00052	[ ---------------- ]	XylR protein; ROK family protein, protein binding; HET: GOL; 2.1A {Staphylococcus aureus subsp. aureus}
340	4V3P_SV	100	53	97.4	0.00054	[ ------------- ]	40S WHEAT GERM RIBOSOME1/RNA Complex; RIBOSOME; 34.0A {Triticum aestivum}
341	1XD7_A	145	59	97.3	0.00057	[ -------------- ]	ywnA; Structural Genomics, Protein Structure Initiative; 2.3A {Bacillus subtilis subsp. subtilis} SCOP: a.4.5.55
342	2EK5_C	129	44	97.3	0.00023	[ ----------- ]	Predicted transcriptional regulators; Helix-Turn-Helix, Interwined alpha helices, TRANSCRIPTION; 2.2A {Corynebacterium glutamicum ATCC 13032}
343	1XMX_A	385	81	97.3	0.0017	[-------------------- ]	hypothetical protein VC1899; alpha-beta, MCSG, protein structure initiative; HET: GOL, FMT; 2.1A {Vibrio cholerae} SCOP: c.52.1.26
344	1OYI_A	82	53	97.3	0.00059	[ ------------- ]	Protein E3; (alpha+beta) helix-turn-helix, Viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
345	3NEU_A	125	36	97.3	0.00097	[ --------- ]	Lin1836 protein; structural genomics, PSI-2, protein structure; 1.58A {Listeria innocua}
346	3ISP_B	303	63	97.3	0.00029	[ ----------------- ]	HTH-type transcriptional regulator Rv1985c/MT2039; rod shaped structure, DNA binding; 2.7A {Mycobacterium tuberculosis}
347	1Z05_A	429	58	97.2	0.00072	[ -------------- ]	transcriptional regulator, ROK family; ROK family, transcriptional regulator, Structural; HET: SO4; 2.0A {Vibrio cholerae O1 biovar eltor} SCOP: c.55.1.10, a.4.5.63
348	4CIC_A	153	57	97.2	0.0012	[ -------------- ]	TRANSCRIPTIONAL REGULATOR, BADM/RRF2 FAMILY, HEXA-ALANINE; TRANSCRIPTION, TRANSCRIPTION REGULATION, DNA RECOGNITION; 1.6A {THERMINCOLA POTENS}
349	4PT7_C	136	64	97.2	0.0018	[ ---------------- ]	Replication initiator A family protein; replication initiation, multidrug resistance, PROTEIN; HET: SO4; 2.35A {Staphylococcus aureus CA-347}
350	4WCG_B	98	51	97.2	0.00087	[ ------------ ]	ORF112/DNA Complex; Zalpha, Z-DNA, innate immunity, Herpes; HET: SO4; 1.5A {Cyprinid herpesvirus 3}
351	3ISP_A	303	63	97.2	0.00029	[ ----------------- ]	HTH-type transcriptional regulator Rv1985c/MT2039; rod shaped structure, DNA binding; 2.7A {Mycobacterium tuberculosis}
352	3T8T_A	143	58	97.2	0.0011	[ -------------- ]	Staphylococcus aureus CymR (oxidized form); Transcriptional regulator protein, Dimer, sulfenic; 1.752A {Staphylococcus aureus}
353	3IZ6_V	108	53	97.2	0.00097	[ ------------- ]	G protein beta subunit, 40S; eukaryotic ribosome,homology modeling,de novo modeling,ribosomal; 5.5A {Triticum aestivum}
354	3T8R_A	143	58	97.2	0.0011	[ -------------- ]	Staphylococcus aureus CymR; Transcriptional regulator protein, Dimer, sulfenic; 1.7A {Staphylococcus aureus}
355	4PQL_A	131	62	97.2	0.0023	[ --------------- ]	Replication initiator A family protein; DNA binding protein; HET: EDO; 2.444A {Staphylococcus aureus}
356	1AOY_A	78	54	97.1	0.0015	[ -------------- ]	ARGININE REPRESSOR; DNA-BINDING PROTEIN, EXPRESSION REGULATION, DNA; NMR {Escherichia coli} SCOP: a.4.5.3
357	2JT1_A	77	48	97.1	0.0012	[ ------------ ]	PefI protein; solution NMR structure, winged helix-turn-helix; NMR {Salmonella typhimurium LT2}
358	5F7Q_E	407	60	97.1	0.00091	[ --------------- ]	Lmo0178 protein/DNA Complex; repressor, open reading frame, kinase; HET: 7PE, PEG, PG5, PG4; 2.4A {Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)}
359	4V6W_AZ	117	53	97.1	0.0014	[ ------------- ]	Ribosome; eukarya, eukaryotic, ribosomal, 80S, RNA; 6.0A {Drosophila melanogaster}
360	5FSH_A	467	83	97.1	0.0025	[--------------------- ]	CSM6; HYDROLASE, CRISPR-CAS, RIBONUCLEASE, ENDONUCLEASE; 2.301A {THERMUS THERMOPHILUS}
361	1YLF_A	149	58	97.1	0.0013	[ -------------- ]	RRF2 family protein; structural genomics, RRF2 family, transcription; 2.5A {Bacillus cereus ATCC 14579} SCOP: a.4.5.55
362	1YLF_C	149	58	97.1	0.0013	[ -------------- ]	RRF2 family protein; structural genomics, RRF2 family, transcription; 2.5A {Bacillus cereus ATCC 14579} SCOP: a.4.5.55
363	4V8M_AU	113	53	97.0	0.0012	[ ------------- ]	Ribosome; RIBOSOME, EUKARYOTIC, KINETOPLASTIDS, EXPANSION SEGMENTS; 5.57A {TRYPANOSOMA BRUCEI BRUCEI}
364	3ZEY_U	113	53	97.0	0.0012	[ ------------- ]	40S RIBOSOMAL PROTEIN S3A, PUTATIVE; RIBOSOME, EUKARYOTIC, KINETOPLASTIDS, EXPANSION SEGMENTS; 5.57A {TRYPANOSOMA BRUCEI BRUCEI}
365	3K69_A	162	57	97.0	0.0012	[ -------------- ]	Putative transcription regulator; PUTATIVE TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS; 1.95A {Lactobacillus plantarum}
366	2XVC_A	59	43	97.0	0.0013	[ ----------- ]	ESCRT-III, CDVA, SSO0911; CELL CYCLE, CELL DIVISION, CYTOKINESIS; 2.15A {SULFOLOBUS SOLFATARICUS}
367	3L09_C	266	47	97.0	0.0005	[ ------------ ]	Putative transcriptional regulator; Putative transcriptional regulator, Structural Genomics; HET: SO4; 2.81A {Jannaschia sp.}
368	2HGC_A	102	59	97.0	0.00033	[ --------------- ]	YjcQ protein; SR346, AutoStructure, NESG, PSI-2, Northeast; NMR {Bacillus subtilis} SCOP: a.4.5.77
369	1XN7_A	78	46	96.9	0.0022	[ ----------- ]	Hypothetical protein yhgG; ALPHA+BETA, GFT NMR, Structural Genomics; NMR {Escherichia coli} SCOP: a.4.5.62
370	5KVR_A	77	33	96.9	0.0017	[ -------- ]	Lmo2184 protein; CENTER FOR STRUCTURAL GENOMICS OF; 1.36A {Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)}
371	4AWX_B	84	49	96.9	0.0016	[ ------------ ]	FERROUS IRON TRANSPORT PROTEIN B; METAL TRANSPORT; 2.3A {KLEBSIELLA PNEUMONIAE}
372	3K2Z_B	196	51	96.9	0.0032	[ ------------ ]	LexA repressor (E.C.3.4.21.88); winged helix-turn-helix, repressor, LexA, SOS; 1.37A {Thermotoga maritima}
373	4UJR_3	107	53	96.9	0.0025	[ ------------- ]	60S RIBOSOMAL PROTEIN L15-A, 60S; TRANSLATION, RIBOSOME, 40S, 60S, 80S; HET: MG, OHX; 2.8A {SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C}
374	5D4S_B	88	35	96.9	0.0018	[ --------- ]	Arabinose metabolism transcriptional repressor/DNA Complex; AraR, Transcription factor, winged-helix-turn-helix, TRANSCRIPTION-DNA; 1.972A {Bacillus subtilis (strain 168)}
375	2B0L_C	102	54	96.8	0.0003	[ -------------- ]	GTP-sensing transcriptional pleiotropic repressor codY; CodY, DNA-binding Nucleotide-binding ; 2.9A {Bacillus subtilis} SCOP: a.4.5.66
376	1BIA_A	321	58	96.8	0.0025	[ --------------- ]	BIRA BIFUNCTIONAL PROTEIN (ACTS AS; TRANSCRIPTION REGULATION; 2.3A {Escherichia coli} SCOP: b.34.1.1, a.4.5.1, d.104.1.2
377	2EWN_A	321	58	96.8	0.0025	[ --------------- ]	BirA bifunctional protein (E.C.6.3.4.15); helix-turn-helix, disorder-to-order transition, biotin, Ligase; HET: BTX; 2.8A {Escherichia coli} SCOP: a.4.5.1, b.34.1.1, d.104.1.2
378	3K2Z_A	196	50	96.8	0.0042	[ ------------ ]	LexA repressor (E.C.3.4.21.88); winged helix-turn-helix, repressor, LexA, SOS; 1.37A {Thermotoga maritima}
379	3FXQ_A	305	62	96.8	0.0014	[ ---------------- ]	LysR type regulator of tsaMBCD; LysR-type, transcriptional regulator, LTTR, TsaR; 1.85A {Comamonas testosteroni}
380	5EY0_B	274	60	96.8	0.0024	[ --------------- ]	GTP-sensing transcriptional pleiotropic repressor CodY; GTP-sensing, pleiotropic transcription regulator, TRANSCRIPTION; HET: ILE, GTP; 1.6A {Staphylococcus aureus (strain Mu3 / ATCC 700698)}
381	2O3F_B	111	52	96.8	0.0026	[ ------------- ]	Putative HTH-type transcriptional regulator ybbH; APC85504, putative transcriptional regulator ybbH; HET: SO4; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
382	2O3F_C	111	52	96.8	0.0026	[ ------------- ]	Putative HTH-type transcriptional regulator ybbH; APC85504, putative transcriptional regulator ybbH; HET: SO4; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
383	3C7J_B	237	53	96.8	0.0025	[ ------------- ]	Transcriptional regulator, GntR family; transcriptional regulator, GntR family, structural; 2.1A {Pseudomonas syringae pv. tomato}
384	3C7J_A	237	53	96.7	0.0025	[ ------------- ]	Transcriptional regulator, GntR family; transcriptional regulator, GntR family, structural; 2.1A {Pseudomonas syringae pv. tomato}
385	3EQX_A	373	49	96.7	0.0025	[ ------------ ]	FIC DOMAIN CONTAINING TRANSCRIPTIONAL REGULATOR; FIC FAMILY PROTEIN, STRUCTURAL GENOMICS; HET: PGE; 1.6A {Shewanella oneidensis}
386	5FJ8_P	317	54	96.7	0.00046	[ -------------- ]	DNA-DIRECTED RNA POLYMERASE III SUBUNIT; RNA POLYMERASE III, POL III; 3.9A {SACCHAROMYCES CEREVISIAE}
387	5FJ9_P	317	54	96.7	0.00046	[ -------------- ]	DNA-DIRECTED RNA POLYMERASE III SUBUNIT; RNA POLYMERASE III, POL III; 4.6A {SACCHAROMYCES CEREVISIAE}
388	1IZ1_B	294	60	96.7	0.0033	[ ---------------- ]	LysR-type regulatory protein; LONG ALPHA HELIX CONNECTING DNA; 2.5A {Cupriavidus necator} SCOP: a.4.5.37, c.94.1.1
389	4HAM_A	134	36	96.7	0.0021	[ --------- ]	Lmo2241 protein; Structural Genomics, PSI-Biology, Midwest Center; HET: GOL, SO4; 1.905A {Listeria monocytogenes}
390	5LZS_ZZ	125	54	96.7	0.004	[ ------------- ]	uL2, uL3, uL4, 60S ribosomal; Translation, Elongation, Ribosome; HET: 7C4, GDP, MG, SEP; 3.31A {Oryctolagus cuniculus}
391	4U0Y_D	78	33	96.7	0.0041	[ -------- ]	YvoA-DBD/DNA Complex; Transcription, Repressor, Bacterial transcription regulation; 1.91A {Bacillus subtilis subsp. subtilis str. 168}
392	4L5J_C	318	52	96.7	0.0015	[ ------------- ]	Transcriptional regulator LsrR; DNA transcriptional regulator, Phospho-AI-2 binding; HET: HSX; 2.6A {Escherichia coli}
393	5LNH_F	263	52	96.7	0.0052	[ ------------- ]	GTP-sensing transcriptional pleiotropic repressor CodY; GAF, wHTH, transcriptional regulator, CodY; HET: MSE, SO4; 3.0A {Bacillus subtilis (strain 168)}
394	4RO3_A	120	53	96.6	0.0052	[ ------------- ]	Hypothetical Protein; Structural Genomics, NIAID, National Institute; HET: SO4, MSE; 1.8A {Vibrio cholerae O1 biovar El Tor}
395	3TQN_B	113	35	96.6	0.0046	[ --------- ]	Transcriptional regulator, GntR family; Regulatory functions, TRANSCRIPTION; HET: MSE; 2.8A {Coxiella burnetii}
396	3LWF_A	159	55	96.6	0.0074	[ -------------- ]	Putative transcriptional regulator; Putative transcriptional regulator, Structural Genomics; HET: SO4; 2.06A {Listeria innocua}
397	3LMM_B	583	50	96.6	0.0045	[ ------------ ]	Uncharacterized protein; multi-domained alpha-beta protein, Structural Genomics; 3.0A {Corynebacterium diphtheriae}
398	1O3Q_A	200	38	96.6	0.0042	[ --------- ]	CATABOLITE GENE ACTIVATOR PROTEIN/DNA COMPLEX; PROTEIN-DNA COMPLEX, CAP, CAP-DNA, CATABOLITE; HET: CMP; 3.0A {Escherichia coli} SCOP: b.82.3.2, a.4.5.4
399	1IXC_A	294	60	96.6	0.0033	[ ---------------- ]	LysR-type regulatory protein; Long alpha helix connecting DNA; 2.2A {Cupriavidus necator} SCOP: a.4.5.37, c.94.1.1
400	3LMM_D	583	50	96.6	0.0048	[ ------------ ]	Uncharacterized protein; multi-domained alpha-beta protein, Structural Genomics; 3.0A {Corynebacterium diphtheriae}
401	5JR3_C	344	63	96.6	0.0049	[ ---------------- ]	Carminomycin 4-O-methyltransferase DnrK (E.C.2.1.1.292); natural product biosynthesis, Structural Genomics; HET: 4MU, SAH, SO4; 1.84A {Streptomyces peucetius}
402	3JBO_Y	154	65	96.6	0.0035	[ ---------------- ]	PROTEIN/RNA Complex; RIBOSOME; 5.8A {Plasmodium falciparum 3D7}
403	1H9T_A	243	45	96.5	0.0047	[ ----------- ]	FATTY ACID METABOLISM REGULATOR PROTEIN; TRANSCRIPTIONAL REGULATION; 3.25A {ESCHERICHIA COLI} SCOP: a.78.1.1, a.4.5.6
404	1HW1_A	239	39	96.5	0.0041	[ ---------- ]	FATTY ACID METABOLISM REGULATOR PROTEIN; helix-turn-helix, helix bundle, TRANSCRIPTION; HET: SO4; 1.5A {Escherichia coli} SCOP: a.4.5.6, a.78.1.1
405	4OU0_A	73	51	96.5	0.0096	[ ------------ ]	Replication protein A 32 kDa; winged-helix turn helix, protein-protein interaction; HET: SCH; 1.4A {Homo sapiens}
406	1JHG_A	101	47	96.5	0.011	[ ------------ ]	TRP OPERON REPRESSOR; REGULATORY PROTEIN-PEPTIDE complex, DNA BINDING; HET: TRP; 1.3A {Escherichia coli} SCOP: a.4.12.1
407	2DI3_A	239	31	96.5	0.0042	[ -------- ]	Bacterial regulatory proteins, GntR family; helix-turn-helix, TRANSCRIPTION; 2.05A {Corynebacterium glutamicum}
408	3EET_A	272	49	96.5	0.01	[ ------------- ]	Putative GntR-family transcriptional regulator; GntR-family transcriptional regulator, Streptomyces avermitilis; 1.969A {Streptomyces avermitilis}
409	1Z6R_A	406	60	96.5	0.0095	[ --------------- ]	Mlc protein; transcriptional repressor, ROK family protein; 2.7A {Escherichia coli} SCOP: a.4.5.63, c.55.1.10
410	2W48_A	315	46	96.5	0.0086	[ ------------ ]	SORBITOL OPERON REGULATOR; SORC, ACTIVATOR, REPRESSOR, DNA-BINDING, TRANSCRIPTION; HET: GOL; 3.2A {KLEBSIELLA PNEUMONIAE}
411	3FZV_B	306	63	96.4	0.0021	[ ---------------- ]	Probable transcriptional regulator; LysR, transcriptional regulator, structural genomics; HET: SO4; 2.71A {Pseudomonas aeruginosa PA01}
412	3L4G_O	508	61	96.4	0.001	[ --------------- ]	Phenylalanyl-tRNA synthetase alpha chain (E.C.6.1.1.20); aminoacylation, tRNA-binding, DNA-binding domain, four-helix; HET: PHE; 3.3A {Homo sapiens}
413	1V4R_A	102	44	96.4	0.0016	[ ----------- ]	Transcriptional Repressor; helix-turn-helix, winged-helix, GENE REGULATION; NMR {Streptomyces} SCOP: a.4.5.6
414	2IP2_B	334	60	96.4	0.0078	[ --------------- ]	Probable phenazine-specific methyltransferase; methyltransferase, phenazine, pyocyanin, phenazine-1-carboxylic acid; 1.8A {Pseudomonas aeruginosa}
415	3SZP_B	291	60	96.4	0.0033	[ ---------------- ]	Transcriptional regulator, LysR family; winged helix-turn helix, DNA-binding, transcription; 2.202A {Vibrio cholerae}
416	2HOE_A	380	57	96.4	0.0039	[ -------------- ]	N-acetylglucosamine kinase (E.C.2.7.1.59); TM1224, N-acetylglucosamine kinase (EC 2.7.1.59); 2.46A {Thermotoga maritima} SCOP: a.4.5.63, c.55.1.10
417	2OZ6_A	207	41	96.3	0.0072	[ ---------- ]	Cyclic AMP receptor-like protein; winged helix, helix-turn-helix, transcription factor; HET: CMP; 2.8A {Pseudomonas aeruginosa} SCOP: a.4.5.4, b.82.3.2
418	2P5K_A	64	44	96.3	0.014	[ ----------- ]	Arginine repressor; DNA-binding domain, winged helix-turn-helix (wHTH); 1.0A {Bacillus subtilis} SCOP: a.4.5.3
419	1TC3_C	51	47	96.3	0.011	[ ----------- ]	TC3 TRANSPOSASE/DNA COMPLEX; TRANSPOSASE, DNA BINDING, HELIX-TURN-HELIX, TC1/MARINER; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
420	2P5L_D	64	44	96.3	0.014	[ ----------- ]	Arginine repressor/DNA Complex; DNA-binding domain, winged helix-turn-helix, ARG; HET: SO4; 2.85A {Bacillus subtilis} SCOP: a.4.5.3
421	3EET_B	272	49	96.3	0.009	[ ------------ ]	Putative GntR-family transcriptional regulator; GntR-family transcriptional regulator, Streptomyces avermitilis; 1.969A {Streptomyces avermitilis}
422	3RQI_A	184	43	96.3	0.0049	[ ----------- ]	Response regulator protein; Structural Genomics, Seattle Structural Genomics; HET: SO4, CIT; 1.7A {Burkholderia pseudomallei}
423	5EEH_C	376	63	96.2	0.009	[ --------------- ]	Carminomycin 4-O-methyltransferase DnrK (E.C.2.1.1.292); unnatural substrate, Structural Genomics, PSI-Biology; HET: P9P, SAH, SO4; 1.82A {Streptomyces peucetius}
424	2GAU_A	232	37	96.2	0.0088	[ --------- ]	transcriptional regulator, Crp/Fnr family; Structural genomics, transcriptional regulator, Porphyromonas; 1.9A {Porphyromonas gingivalis} SCOP: a.4.5.4, b.82.3.2
425	1A04_A	215	43	96.2	0.019	[ ---------- ]	NITRATE/NITRITE RESPONSE REGULATOR PROTEIN NARL; SIGNAL TRANSDUCTION PROTEIN, RESPONSE REGULATORS; 2.2A {Escherichia coli} SCOP: a.4.6.2, c.23.1.1
426	3EDP_A	236	44	96.2	0.011	[ ---------- ]	Lin2111 protein; APC88337, lin2111, Listeria innocua Clip11262; HET: GOL; 2.092A {Listeria innocua}
427	4P9F_A	215	36	96.2	0.0069	[ --------- ]	HTH-type transcriptional regulator mcbR; GNTR FAMILY, TRANSCRIPTIONAL REGULATOR, Biofilm; HET: MSE; 2.099A {Escherichia coli UMEA 3718-1}
428	3B02_A	195	41	96.2	0.0067	[ ---------- ]	Transcriptional regulator, Crp family; Structural Genomics, RIKEN Structural Genomics/Proteomics; 1.92A {Thermus thermophilus}
429	3IHU_B	222	45	96.2	0.014	[ ----------- ]	Transcriptional regulator, GntR family; YP_298823.1, DNA binding protein, Structural; 1.92A {Ralstonia eutropha}
430	3IWF_B	107	49	96.1	0.011	[ ------------ ]	Transcription regulator RpiR family; RpiR, transcriptional, regulator, N-terminal, staphylococcus; HET: TRS, MXE; 1.4A {Staphylococcus epidermidis}
431	3IHU_A	222	45	96.1	0.014	[ ----------- ]	Transcriptional regulator, GntR family; YP_298823.1, DNA binding protein, Structural; 1.92A {Ralstonia eutropha}
432	2WV0_A	243	33	96.1	0.014	[ -------- ]	HTH-TYPE TRANSCRIPTIONAL REPRESSOR YVOA; REPRESSOR, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION; HET: SO4; 2.4A {BACILLUS SUBTILIS}
433	3E6C_C	250	41	96.1	0.0083	[ ---------- ]	Cyclic nucleotide-binding protein/DNA Complex; CprK, Halorespiration, transcriptional regulator, TRANSCRIPTION; HET: 3C4; 1.8A {Desulfitobacterium hafniense} SCOP: a.4.5.4, b.82.3.2
434	3MZH_B	225	43	96.1	0.011	[ ----------- ]	PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY; TRANSCRIPTION, TRANSCRIPTION REGULATOR, CAMP, CAMP; HET: CMP; 2.9A {Mycobacterium tuberculosis}
435	1WSU_A	124	41	96.1	0.01	[ ---------- ]	Selenocysteine-specific elongation factor/5'-R(GPGPCPGPUPUPGPCPCPGPGPUPCPUGPGPCPAPAPCPGPCP*C)-3'; winged-helix, TRANSLATION-RNA COMPLEX; 2.3A {Moorella thermoacetica} SCOP: a.4.5.35
436	3RKX_A	323	55	96.1	0.014	[ ------------- ]	Biotin-SSO1423	200	437	1ZYB_A	232	57	96.0	0.011	[ --------------- ]	transcription regulator, CRP family; np_813211.1, Structural Genomics, Joint Center; HET: GOL; 2.15A {Bacteroides thetaiotaomicron} SCOP: b.82.3.2, a.4.5.4
438	2N5G_B	101	47	96.0	0.028	[ ----------- ]	TrfB transcriptional repressor protein; TRANSCRIPTION; NMR {Escherichia coli}
439	3RKY_A	323	55	96.0	0.014	[ ------------- ]	Biotin-SSO1423	200	440	4A12_B	190	49	96.0	0.0097	[ ------------ ]	TRANSCRIPTION FACTOR FAPR; TRANSCRIPTION, LIPID HOMEOSTASIS; 3.15A {STAPHYLOCOCCUS AUREUS}
441	1JHF_A	202	51	96.0	0.026	[ ------------ ]	LEXA REPRESSOR (E.C.3.4.21.88); LexA SOS repressor, HYDROLASE; 1.8A {Escherichia coli} SCOP: b.87.1.1, a.4.5.2
442	5N07_A	161	55	96.0	0.016	[ ------------- ]	HTH-type transcriptional repressor NsrR; NO SENSOR, IRON SULFUR CLUSTER; 1.95A {Streptomyces coelicolor A3(2)}
443	3L4G_C	508	62	96.0	0.0031	[ --------------- ]	Phenylalanyl-tRNA synthetase alpha chain (E.C.6.1.1.20); aminoacylation, tRNA-binding, DNA-binding domain, four-helix; HET: PHE; 3.3A {Homo sapiens}
444	3IC7_B	126	43	96.0	0.0024	[ ----------- ]	Putative transcriptional regulator; helix-turn-helix, Structural Genomics, PSI-2, Protein; 2.819A {Bacteroides thetaiotaomicron}
445	3I53_A	332	60	96.0	0.02	[ --------------- ]	O-methyltransferase (E.C.2.1.1.-); co-complex, Rossmann-like fold, Methyltransferase, Transferase; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp. neocarzinostaticus}
446	2ZCW_A	202	38	95.9	0.014	[ ---------- ]	Transcriptional regulator, FNR/CRP family; FNR/CRP family, transcriptional regulator, Thermus; HET: MPD; 1.5A {Thermus thermophilus}
447	3D0S_B	227	42	95.9	0.016	[ ---------- ]	CAMP RECEPTOR PROTEIN FROM M.TUBERCULOSIS; CAMP RECEPTOR PROTEIN (CRP), DIMER; 2.0A {Mycobacterium tuberculosis}
448	2H9B_B	312	61	95.9	0.0025	[ ---------------- ]	HTH-type transcriptional regulator benM; LTTR, BenM, Transcriptional activator, lysR-type; HET: SO4; 1.8A {Acinetobacter sp.}
449	2ESN_A	310	65	95.9	0.0081	[ ----------------- ]	probable transcriptional regulator; PA0477, APC5828,transcription, regulator, PSI, protein; 2.1A {Pseudomonas aeruginosa} SCOP: a.4.5.37, c.94.1.1
450	3IWZ_D	230	38	95.9	0.018	[ --------- ]	Catabolite activation-like protein; Xcc, pathogenicity, CRP, CLP, c-di-GMP; 2.3A {Xanthomonas campestris pv. campestris}
451	2W48_B	315	45	95.9	0.0086	[ ----------- ]	SORBITOL OPERON REGULATOR; SORC, ACTIVATOR, REPRESSOR, DNA-BINDING, TRANSCRIPTION; HET: GOL; 3.2A {KLEBSIELLA PNEUMONIAE}
452	4CYD_C	225	40	95.9	0.015	[ ---------- ]	PROBABLE TRANSCRIPTION REGULATOR, PROBABLE EXPRESSION; TRANSCRIPTION, TRANSCRIPTIONAL REGULATOR; HET: CMP, GOL; 1.82A {SYNTHETIC CONSTRUCT}
453	2ESN_B	310	64	95.8	0.0081	[ ---------------- ]	probable transcriptional regulator; PA0477, APC5828,transcription, regulator, PSI, protein; 2.1A {Pseudomonas aeruginosa} SCOP: c.94.1.1, a.4.5.37
454	4M72_A	337	57	95.8	0.013	[ -------------- ]	Methyltransferase MppJ; Rossmann Fold, Methyltransferase, SAM/PPY Binding; HET: M72, SAH, HF2; 2.1A {Streptomyces hygroscopicus}
455	3KFW_X	247	49	95.8	0.0069	[ ------------ ]	Uncharacterized protein; structural genomics, PSI-2, Protein Structure; 2.5A {Mycobacterium tuberculosis}
456	4M73_A	337	57	95.7	0.011	[ -------------- ]	Methyltransferase MppJ; Rossmann Fold, Methyltransferase, SAM/PPY Binding; HET: CA, M72, HF2, SAH; 2.0A {Streptomyces hygroscopicus}
457	3E97_A	231	43	95.7	0.019	[ ---------- ]	Transcriptional regulator, Crp/Fnr family; YP_604437.1, transcriptional regulator, Crp/Fnr family; 1.86A {Deinococcus geothermalis DSM 11300}
458	3FZV_D	306	63	95.7	0.0021	[ ---------------- ]	Probable transcriptional regulator; LysR, transcriptional regulator, structural genomics; HET: SO4; 2.71A {Pseudomonas aeruginosa PA01}
459	3I58_A	332	60	95.7	0.02	[ --------------- ]	O-methyltransferase (E.C.2.1.1.-); ternary complex, Rossmann-like fold, Methyltransferase; HET: SAH, GOL, 7NA; 2.69A {Streptomyces carzinostaticus subsp. neocarzinostaticus}
460	2FMY_A	220	43	95.7	0.018	[ ---------- ]	carbon monoxide oxidation system transcription; DNA transcription regulator, DNA BINDING; HET: IMD, HEM; 2.2A {Carboxydothermus hydrogenoformans}
461	3F8M_B	248	34	95.7	0.012	[ --------- ]	GntR-family protein transcriptional regulator; PhnF, GntR, HutC, transcription, regulator; HET: GOL; 1.8A {Mycobacterium smegmatis}
462	3F8M_A	248	34	95.7	0.012	[ --------- ]	GntR-family protein transcriptional regulator; PhnF, GntR, HutC, transcription, regulator; HET: GOL; 1.8A {Mycobacterium smegmatis}
463	3T1B_C	291	60	95.6	0.019	[ ---------------- ]	Transcriptional regulator, LysR family; winged helix, virulence, TRANSCRIPTION; 2.7A {Vibrio cholerae}
464	2HS5_A	239	42	95.6	0.02	[ ---------- ]	putative transcriptional regulator GntR; APC6050, transcriptional regulator, GntR, Rhodococcus; 2.2A {Rhodococcus sp.} SCOP: a.78.1.1, a.4.5.6
465	3BWG_A	239	44	95.6	0.023	[ ---------- ]	Uncharacterized HTH-type transcriptional regulator yydK; APC85486, YydK, transcriptional regulator, structural; HET: EDO; 2.09A {Bacillus subtilis subsp. subtilis} SCOP: a.4.5.6, d.190.1.2
466	3KLO_A	225	44	95.6	0.038	[ ----------- ]	Transcriptional regulator VpsT; REC domain, HTH domain, DNA-binding; HET: C2E, TAR; 2.802A {Vibrio cholerae}
467	2H98_A	313	61	95.6	0.0038	[ ---------------- ]	HTH-type transcriptional regulator catM; CatM, BenM, LTTR, Transcriptional regulator; 1.8A {Acinetobacter sp.}
468	3BWG_B	239	43	95.6	0.023	[ ---------- ]	Uncharacterized HTH-type transcriptional regulator yydK; APC85486, YydK, transcriptional regulator, structural; HET: EDO; 2.09A {Bacillus subtilis subsp. subtilis} SCOP: a.4.5.6, d.190.1.2
469	2COH_.	202	38	95.6	0.024	[ --------- ]	Transcriptional Regulator; helix-turn-helix, Structural Genomics, RIKEN Structural; HET: MPD; 1.5A {Thermus thermophilus}
470	3DV8_A	220	42	95.6	0.025	[ ---------- ]	transcriptional regulator, Crp/Fnr family; Cyclic nucleotide-binding domain, structural genomics; 2.55A {Eubacterium rectale ATCC 33656}
471	2XHK_B	222	40	95.6	0.026	[ ---------- ]	GLOBAL NITROGEN REGULATOR; TRANSCRIPTION, NITROGEN ASSIMILATION, CRP/FNR SUPERFAMILY; HET: AKG; 2.3A {SYNECHOCOCCUS ELONGATUS}
472	4RFA_A	226	38	95.6	0.024	[ ---------- ]	Lmo0740 protein; Structural Genomics, PSI-Biology, Midwest Center; 2.21A {Listeria monocytogenes}
473	4R8H_A	222	33	95.6	0.025	[ -------- ]	cAMP-activated global transcriptional regulator CRP; Transcription factor, Transcription; HET: SP1, GOL; 1.46A {Escherichia coli}
474	3TQN_C	113	33	95.6	0.0046	[ -------- ]	Transcriptional regulator, GntR family; Regulatory functions, TRANSCRIPTION; HET: MSE; 2.8A {Coxiella burnetii}
475	2Q0O_A	236	47	95.5	0.043	[ ------------ ]	quorum sensing transcription factor TraR; helix-turn-helix, two-helix coiled coil, TRANSCRIPTION; HET: LAE; 2.0A {Rhizobium sp.}
476	2H6B_A	250	34	95.5	0.026	[ -------- ]	Cyclic nucleotide-binding domain; halorespiration, DNA binding, chlorinated ligand; HET: SO4, 3C4; 2.2A {Desulfitobacterium hafniense} SCOP: b.82.3.2, a.4.5.4
477	5F7R_E	404	56	95.5	0.0026	[ -------------- ]	Lmo0178 protein; Repressor, open reading frame, kinase; HET: GLC; 1.85A {Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)}
478	5WUR_B	187	46	95.5	0.058	[ ----------- ]	ECF RNA polymerase sigma factor; Sigma-anti-sigma complex, zinc binding motif; 2.6A {Bacillus subtilis subsp. subtilis str. 168}
479	5F64_B	207	44	95.5	0.061	[ ----------- ]	Positive transcription regulator EvgA; transcription regulator, sensor, EvgS, structural; 2.71A {Shigella flexneri 2a str. 2457T}
480	4EV0_D	216	40	95.5	0.023	[ ---------- ]	Transcription regulator, Crp family; cAMP binding, winged helix-turn-helix motif; HET: SO4, CMP; 2.402A {Thermus thermophilus}
481	2R3S_B	335	60	95.4	0.025	[ --------------- ]	uncharacterized protein; METHYLTRANSFERASE DOMAIN, STRUCTURAL GENOMICS, JOINT; HET: EDO; 2.15A {Nostoc punctiforme}
482	5C17_A	209	46	95.4	0.069	[ ----------- ]	MerB2; Bacterial Proteins, Cysteine, Lyases, Mercury; HET: DTV, GOL; 1.24A {Bacillus megaterium}
483	1JHH_A	202	51	95.4	0.051	[ ------------ ]	LEXA REPRESSOR; LexA SOS repressor, HYDROLASE; 2.1A {Escherichia coli} SCOP: a.4.5.2, b.87.1.1
484	4I2O_B	243	33	95.4	0.029	[ -------- ]	FixK2 protein/DNA complex; TRANSCRIPTION REGULATOR-DNA complex, CRP/FNR superfamily; 1.77A {Bradyrhizobium japonicum}
485	3LA7_A	243	43	95.4	0.032	[ ---------- ]	Global nitrogen regulator; nitrogen regulator, Activator, DNA-binding, Transcription; HET: BOG; 1.9A {Anabaena}
486	1YIO_A	208	43	95.4	0.066	[ ---------- ]	response regulator StyR; Transcription regulation, DNA BINDING PROTEIN; 2.2A {Pseudomonas fluorescens} SCOP: a.4.6.2, c.23.1.1
487	3LST_B	348	60	95.4	0.016	[ --------------- ]	CalO1 Methyltransferase; Calicheamicin, Methyltransferase, CalO1, enediyne, SAH; HET: SAH; 2.4A {Micromonospora echinospora}
488	2LVS_A	105	45	95.3	0.048	[ ----------- ]	Putative uncharacterized protein; DNA BINDING PROTEIN; NMR {Hyperthermus butylicus}
489	1X19_A	359	60	95.3	0.033	[ --------------- ]	CrtF-related protein; METHYLTRANSFERASE, BACTERIOCHLLOCHLOROPHYLL, BchU, SAM, SAH; 2.27A {Chlorobium tepidum}
490	2W7N_A	101	43	95.3	0.028	[ ---------- ]	TRFB TRANSCRIPTIONAL REPRESSOR PROTEIN; INCP, REPRESSOR, DNA-BINDING, TRANSCRIPTION/DNA, PROTEIN-DNA; 1.85A {ESCHERICHIA COLI}
491	3IC7_A	126	43	95.2	0.0024	[ ----------- ]	Putative transcriptional regulator; helix-turn-helix, Structural Genomics, PSI-2, Protein; 2.819A {Bacteroides thetaiotaomicron}
492	4D7K_F	353	60	95.2	0.026	[ --------------- ]	SAM-DEPENDENT METHYLTRANSFERASES (E.C.2.1.1.-); TRANSFERASE, METHYLTRANSFERASE, FLAVIN, RIBOFLAVIN, ROSEOFLAVIN; 2.22A {STREPTOMYCES DAVAWENSIS JCM 4913}
493	4D7K_D	353	60	95.2	0.026	[ --------------- ]	SAM-DEPENDENT METHYLTRANSFERASES (E.C.2.1.1.-); TRANSFERASE, METHYLTRANSFERASE, FLAVIN, RIBOFLAVIN, ROSEOFLAVIN; 2.22A {STREPTOMYCES DAVAWENSIS JCM 4913}
494	5I2H_A	364	61	95.1	0.019	[ --------------- ]	O-methyltransferase family 2; Midwest Center for Structural Genomics; HET: EDO, MSE, FMT, AGI; 1.551A {Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290)}
495	6PAX_A	133	47	95.1	0.1	[ ----------- ]	HOMEOBOX PROTEIN PAX-6/DNA COMPLEX; PAX, PAIRED DOMAIN, TRANSCRIPTION, PROTEIN-DNA; 2.5A {Homo sapiens} SCOP: a.4.1.5
496	5HEV_C	210	47	95.1	0.095	[ ------------ ]	Response regulator protein VraR; Enterococcus faecium, LiaR, response regulator; HET: BEF; 3.192A {Enterococcus faecium SD3B-2}
497	4HYE_B	220	47	95.1	0.085	[ ------------ ]	Response regulator; Cytosol, TRANSCRIPTION ACTIVATOR; 1.7A {Streptococcus pneumoniae}
498	5CVR_A	259	40	95.1	0.033	[ ---------- ]	FNR type regulator; transcription; HET: MPD; 2.6A {Aliivibrio fischeri}
499	5E44_A	259	40	95.1	0.033	[ ---------- ]	FNR type regulator; labile dimer, transcription; HET: MPD; 2.65A {Aliivibrio fischeri}
500	2R3S_A	335	60	95.1	0.025	[ --------------- ]	uncharacterized protein; METHYLTRANSFERASE DOMAIN, STRUCTURAL GENOMICS, JOINT; HET: EDO; 2.15A {Nostoc punctiforme}