match no. | target id | target length | alignment length | probability | E-value | coverage | match description |
1 | 2K52_A | 80 | 71 | 90.9 | 0.69 | [ ------------- ] | Uncharacterized protein MJ1198; Uncharacterized protein, Metal-binding, Zinc-finger, Structural; NMR {Methanocaldococcus jannaschii} |
2 | 1SRO_A | 76 | 61 | 71.9 | 17 | [ ----------- ] | PNPASE; S1 RNA-BINDING DOMAIN, POLYNUCLEOTIDE PHOSPHORYLASE; NMR {Escherichia coli} SCOP: b.40.4.5 |
3 | 2KHI_A | 115 | 63 | 65.7 | 17 | [ ----------- ] | 30S ribosomal protein S1; ribosomal protein S1, Phosphoprotein, Ribonucleoprotein; NMR {Escherichia coli} |
4 | 4XXI_A | 157 | 78 | 63.9 | 93 | [ -------------- ] | Phycobiliprotein ApcE; ApcE, phycobilisome, phycocyanobilin attachment, TRANSFERASE; HET: CYC; 2.2A {Nostoc sp. (strain PCC 7120 / UTEX 2576)} |
5 | 2BA0_B | 229 | 62 | 59.6 | 30 | [ ----------- ] | Probable exosome complex RNA-binding protein; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus} SCOP: d.51.1.1, b.84.4.2, b.40.4.5 |
6 | 4XXK_A | 157 | 75 | 59.0 | 93 | [ -------------- ] | Phycobiliprotein ApcE; phycobilisome, ApcE, phycocyanobilin attachment, TRANSFERASE; HET: MSE, CYC; 2.97A {Nostoc sp. (strain PCC 7120 / UTEX 2576)} |
7 | 2BA0_A | 229 | 62 | 58.8 | 30 | [ ----------- ] | Probable exosome complex RNA-binding protein; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus} SCOP: d.51.1.1, b.84.4.2, b.40.4.5 |
8 | 5A5T_F | 364 | 6 | 55.1 | 34 | [ - ] | EUKARYOTIC TRANSLATION INITIATION FACTOR 3; HYDROLASE, EIF3, EUKARYOTIC INITIATION FACTOR; 6.0A {ORYCTOLAGUS CUNICULUS} |
9 | 2K4K_A | 130 | 63 | 54.4 | 40 | [ ----------- ] | General stress protein 13; S1, Stress response, RNA BINDING; NMR {Bacillus subtilis} |
10 | 2L0T_B | 163 | 53 | 54.2 | 79 | [ --------- ] | Ubiquitin, Signal transducing adapter molecule; ubiquitin, VHS, Stam2, endosome, transport; NMR {Homo sapiens} |
11 | 5JEA_H | 316 | 68 | 53.7 | 29 | [ ------------ ] | Exosome complex component RRP45, Exosome; exosome, Ski7, nuclease, RNA degradation; HET: MPD; 2.65A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} |
12 | 2EQS_A | 103 | 63 | 53.4 | 46 | [ ----------- ] | ATP-dependent RNA helicase DHX8 (E.C.3.6.1.-); S1 domain, OB-fold, Structural Genomics; NMR {Homo sapiens} |
13 | 5X51_S | 171 | 61 | 53.1 | 29 | [ ----------- ] | DNA-directed RNA polymerase subunit (E.C.2.7.7.6); transcription, RNA polymerase, TRANSFERASE; HET: ZN; 6.996A {Komagataella phaffii (strain GS115 / ATCC 20864)} |
14 | 3M7N_B | 179 | 62 | 52.8 | 23 | [ ----------- ] | Putative uncharacterized protein AF_0206, Probable; exosome, RNA, Exonuclease, Hydrolase, Nuclease; 2.4A {Archaeoglobus fulgidus} |
15 | 5XOG_G | 171 | 61 | 52.3 | 29 | [ ----------- ] | DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex; HET: APC; 3.0A {Komagataella phaffii (strain GS115 / ATCC 20864)} |
16 | 2JA9_A | 175 | 67 | 51.8 | 33 | [ ------------ ] | EXOSOME COMPLEX EXONUCLEASE RRP40 (E.C.3.1.13.-); RNA-BINDING PROTEIN, RNA, EXOSOME, NUCLEASE; 2.2A {SACCHAROMYCES CEREVISIAE} SCOP: b.40.4.5, d.51.1.1 |
17 | 1SMX_A | 96 | 61 | 50.2 | 69 | [ ----------- ] | Ribonuclease E (E.C.3.1.4.-); OB-fold, RNA-binding, HYDROLASE; 1.8A {Escherichia coli} SCOP: b.40.4.5 |
18 | 1SLJ_A | 96 | 61 | 49.5 | 69 | [ ----------- ] | Ribonuclease E (E.C.3.1.4.-); OB-fold, RNA-binding, HYDROLASE; NMR {Escherichia coli} SCOP: b.40.4.5 |
19 | 2BA1_B | 179 | 62 | 47.2 | 23 | [ ----------- ] | hypothetical protein AF0206, Probable exosome; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus} |
20 | 1GO3_E | 187 | 60 | 47.2 | 45 | [ ----------- ] | DNA-DIRECTED RNA POLYMERASE SUBUNIT E; TRANSFERASE, TRANSFERASE TRANSCRIPTION ; 1.75A {METHANOCOCCUS JANNASCHII} SCOP: b.40.4.5, d.230.1.1 |
21 | 1HH2_P | 344 | 60 | 46.2 | 29 | [ ----------- ] | N UTILIZATION SUBSTANCE PROTEIN A; TRANSCRIPTION REGULATION, TERMINATION; 2.1A {THERMOTOGA MARITIMA} SCOP: d.202.1.1, b.40.4.5, d.52.3.1 |
22 | 2C35_B | 172 | 62 | 44.6 | 25 | [ ----------- ] | DNA-DIRECTED RNA POLYMERASE II 16; TRANSCRIPTION, RNA POLYMERASE II, POLYMERASE; 2.7A {HOMO SAPIENS} SCOP: b.40.4.5, d.230.1.1 |
23 | 1KL9_A | 182 | 65 | 43.8 | 77 | [ ----------- ] | EUKARYOTIC TRANSLATION INITIATION FACTOR 2; OB FOLD, HELICAL DOMAIN, TRANSLATION; 1.9A {Homo sapiens} SCOP: a.60.14.1, b.40.4.5 |
24 | 5IYD_G | 172 | 62 | 43.1 | 25 | [ ----------- ] | DNA-directed RNA polymerase II subunit; initiation, RNA polymerase II, human; HET: ZN; 3.9A {Homo sapiens} |
25 | 2MFI_A | 96 | 60 | 42.7 | 48 | [ ----------- ] | 30S ribosomal protein S1; S1, ribosome binding, translation initiation; NMR {Escherichia coli} |
26 | 4NNG_A | 158 | 61 | 40.6 | 51 | [ ----------- ] | 30S ribosomal protein S1; beta barrel, RIBOSOMAL PROTEIN; 2.02A {Mycobacterium tuberculosis} |
27 | 3HKZ_Q | 180 | 60 | 40.5 | 51 | [ ----------- ] | DNA-directed RNA polymerase subunit A'; RNA polymerase, archaea, Sulfolobus solfataricus; HET: F3S, ZN; 3.4A {Sulfolobus solfataricus} |
28 | 2NN6_I | 209 | 66 | 40.4 | 86 | [ ------------ ] | Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: b.40.4.5, b.84.4.2 |
29 | 2Z0S_A | 235 | 61 | 39.9 | 63 | [ ----------- ] | Probable exosome complex RNA-binding protein; alpha/beta protein, Exosome, RNA BINDING; 3.2A {Aeropyrum pernix} SCOP: d.51.1.1, b.40.4.5 |
30 | 2ASB_A | 251 | 61 | 39.6 | 62 | [ ----------- ] | Transcription elongation protein nusA/RNA Complex; Protein-RNA complex, transcription-RNA COMPLEX; 1.5A {Mycobacterium tuberculosis} SCOP: d.52.3.1, b.40.4.5 |
31 | 4AYB_E | 180 | 60 | 39.3 | 58 | [ ----------- ] | DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6); TRANSFERASE, MULTI-SUBUNIT, TRANSCRIPTION; HET: ZN; 3.202A {SULFOLOBUS SHIBATAE} |
32 | 3LDZ_B | 140 | 72 | 38.9 | 2.5E+02 | [ ------------ ] | Ubiquitin, Signal transducing adapter molecule; ubiquitin-binding, Endosome, Membrane, Protein transport; 2.6A {Bos taurus} |
33 | 3L7Z_C | 249 | 67 | 38.8 | 68 | [ ----------- ] | Probable exosome complex exonuclease 2; Exosome, asymmetry, RNA processing, RNA; HET: SO4; 2.41A {Sulfolobus solfataricus} |
34 | 2NN6_H | 308 | 68 | 37.1 | 43 | [ ------------ ] | Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: d.51.1.1, b.40.4.5, b.84.4.2 |
35 | 2RF4_C | 214 | 67 | 37.0 | 98 | [ ----------- ] | DNA-directed RNA polymerase I subunit; Transferase DNA/RNA, DNA-binding, Phosphorylation, RNA; 3.1A {Saccharomyces cerevisiae} |
36 | 4QJF_A | 190 | 61 | 36.9 | 79 | [ ----------- ] | DNA-directed RNA polymerase, subunit E'; Transcription; 2.312A {Thermococcus kodakarensis} |
37 | 5IE8_A | 89 | 62 | 36.1 | 97 | [ ----------- ] | 30S ribosomal protein S1; Tuberculosis, MtRpsA, Trans-translation, POA, TRANSLATION; NMR {Mycobacterium leprae (strain TN)} |
38 | 4Q7J_D | 281 | 70 | 35.9 | 66 | [ ------------- ] | Elongation factor Ts, Elongation factor; RNA polymerase, RNA binding motif; HET: SO4; 2.9A {Escherichia coli} |
39 | 2R7Z_G | 171 | 61 | 35.2 | 75 | [ ----------- ] | DNA-DIRECTED RNA POLYMERASE II (E.C.2.7.7.6)/DNA-DIRECTED; TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING; 3.8A {Saccharomyces cerevisiae} SCOP: i.8.1.1 |
40 | 1YSH_E | 84 | 40 | 34.4 | 78 | [ ------- ] | ribosomal protein L30/ribosomal protein L37a40S; STRUCTURAL PROTEIN, RNA, STRUCTURAL PROTEIN-RNA; 9.5A {Triticum aestivum} |
41 | 2CQO_A | 119 | 64 | 34.2 | 1.3E+02 | [ ----------- ] | Hypothetical protein FLJ11067; S1 domain, OB-fold, Structural Genomics; NMR {Homo sapiens} |
42 | 3GO5_A | 285 | 60 | 34.1 | 73 | [ ----------- ] | Multidomain protein with S1 RNA-binding; S1 rna-binding domain, structural genomics; HET: EDO; 1.4A {Streptococcus pneumoniae} |
43 | 1WI5_A | 119 | 71 | 34.0 | 63 | [ ------------- ] | RRP5 protein homolog; S1 domain, OB-fold, STRUCTURAL GENOMICS; NMR {Homo sapiens} SCOP: b.40.4.5 |
44 | 2RF4_E | 214 | 67 | 33.5 | 98 | [ ----------- ] | DNA-directed RNA polymerase I subunit; Transferase DNA/RNA, DNA-binding, Phosphorylation, RNA; 3.1A {Saccharomyces cerevisiae} |
45 | 1Y14_D | 171 | 61 | 32.4 | 75 | [ ----------- ] | DNA-directed RNA polymerase II 32; transferase; 2.3A {Saccharomyces cerevisiae} SCOP: b.40.4.5, d.230.1.1 |
46 | 2JE6_I | 251 | 67 | 32.4 | 77 | [ ------------ ] | EXOSOME COMPLEX EXONUCLEASE 2 (E.C.3.1.13.-); NUCLEASE, HYDROLASE, RNA-BINDING, EXONUCLEASE, PHOSPHOROLYTIC; HET: 1PE; 1.6A {SULFOLOBUS SOLFATARICUS} SCOP: b.84.4.2, d.51.1.1, b.40.4.5 |
47 | 4MTN_A | 407 | 58 | 31.6 | 68 | [ ----------- ] | Transcription termination factor NusA; transcription termination factor NusA, PSI-BIOLOGY; HET: SO4; 2.579A {Planctomyces limnophilus} |
48 | 1Q46_A | 175 | 62 | 31.2 | 1.8E+02 | [ ----------- ] | translation initiation factor 2 alpha; initiation factor, eIF2, translation, phosphorylation; 2.86A {Saccharomyces cerevisiae} SCOP: a.60.14.1, b.40.4.5 |
49 | 4NNI_A | 161 | 63 | 30.5 | 93 | [ ----------- ] | 30S ribosomal protein S1; beta barrel, RIBOSOMAL PROTEIN; HET: VGL; 2.64A {Mycobacterium tuberculosis} |
50 | 1LUZ_A | 88 | 67 | 30.3 | 1.4E+02 | [ ------------ ] | Protein K3; 5 stranded anti-parallel beta barrel; 1.8A {Vaccinia virus} SCOP: b.40.4.5 |
51 | 1LUZ_B | 88 | 67 | 30.3 | 1.4E+02 | [ ------------ ] | Protein K3; 5 stranded anti-parallel beta barrel; 1.8A {Vaccinia virus} SCOP: b.40.4.5 |
52 | 5HKQ_I | 129 | 30 | 29.3 | 63 | [ ----- ] | Contact-dependent inhibitor A, Uncharacterized protein; toxin, antitoxin, Structural Genomics, PSI-Biology; HET: MSE; 2.0A {Escherichia coli} |
53 | 2P0T_A | 176 | 59 | 29.2 | 1.9E+02 | [ ---------- ] | UPF0307 protein PSPTO_4464; APC85033, conserved putative protein, Pseudomonas; 2.19A {Pseudomonas syringae pv. tomato} SCOP: a.290.1.1 |
54 | 3GO5_A | 285 | 51 | 29.2 | 1E+02 | [ ----------- ] | Multidomain protein with S1 RNA-binding; S1 rna-binding domain, structural genomics; HET: EDO; 1.4A {Streptococcus pneumoniae} |
55 | 5JEA_I | 295 | 24 | 28.5 | 1E+02 | [ ---- ] | Exosome complex component RRP45, Exosome; exosome, Ski7, nuclease, RNA degradation; HET: MPD; 2.65A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} |
56 | 2NN6_G | 289 | 73 | 28.0 | 87 | [ -------------- ] | Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: b.40.4.5, d.51.1.1, b.84.4.2 |
57 | 2KHJ_A | 109 | 61 | 26.5 | 3.2E+02 | [ ----------- ] | 30S ribosomal protein S1; ribosomal protein S1, OB fold; NMR {Escherichia coli} |
58 | 3CW2_H | 266 | 63 | 24.9 | 1.9E+02 | [ ----------- ] | Translation initiation factor 2 subunit; AIF2, INTACT AIF2, INITIATION FACTOR; 2.8A {Sulfolobus solfataricus} |
59 | 4AIM_A | 726 | 64 | 24.8 | 1E+02 | [ ------------ ] | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (E.C.2.7.7.8), RIBONUCLEASE, RNE/RNG; TRANSFERASE-PEPTIDE COMPLEX, KH DOMAIN, S1; 3.3A {CAULOBACTER VIBRIOIDES} |
60 | 5X8P_8 | 370 | 66 | 24.1 | 1.8E+02 | [ ------------ ] | 50S ribosomal protein L13, chloroplastic,50S; Cryo-EM, ribosome, chloroplast ribosome; 3.4A {Spinacia oleracea} |
61 | 1MHQ_B | 148 | 52 | 23.4 | 4.2E+02 | [ --------- ] | ADP-ribosylation factor binding protein GGA2; SUPER HELIX, PROTEIN TRANSPORT; 2.2A {Homo sapiens} SCOP: a.118.9.2 |
62 | 5C9S_B | 572 | 63 | 22.3 | 36 | [ ----------- ] | Rrp5-CTD; Ribosome biogenesis, Assembly Factor, TPR; 2.7A {Saccharomyces cerevisiae} |
63 | 5K0Y_P | 266 | 63 | 22.2 | 2.3E+02 | [ ----------- ] | Eukaryotic translation initiation factor 2; eukaryotic translation initiation, ribosome, eIF3; 5.8A {Oryctolagus cuniculus} |
64 | 2A19_A | 175 | 63 | 21.8 | 1.5E+02 | [ ----------- ] | Eukaryotic translation initiation factor 2; transferase, kinase, protein biosynthesis, protein; HET: ANP; 2.5A {Saccharomyces cerevisiae} |
65 | 4CEK_A | 307 | 41 | 21.2 | 3.2E+02 | [ ------ ] | REGULATOR OF NONSENSE TRANSCRIPTS 2; TRANSCRIPTION; 2.35A {HOMO SAPIENS} |
66 | 5MPB_U | 338 | 43 | 20.8 | 6.8E+02 | [ ------- ] | Proteasome subunit alpha type-1 (E.C.3.4.25.1); Macromolecular complex, 26S proteasome, Protease; HET: ANP, ADP; 7.8A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)} |
67 | 5LM7_A | 428 | 59 | 20.3 | 92 | [ ----------- ] | Transcription termination/antitermination protein NusA, N; Transcription regulation antitermination Nus proteins; 3.35A {Escherichia coli O157:H7} |