match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	2K52_A	80	71	90.9	0.69	[ ------------- ]	Uncharacterized protein MJ1198; Uncharacterized protein, Metal-binding, Zinc-finger, Structural; NMR {Methanocaldococcus jannaschii}
2	1SRO_A	76	61	71.9	17	[ ----------- ]	PNPASE; S1 RNA-BINDING DOMAIN, POLYNUCLEOTIDE PHOSPHORYLASE; NMR {Escherichia coli} SCOP: b.40.4.5
3	2KHI_A	115	63	65.7	17	[ ----------- ]	30S ribosomal protein S1; ribosomal protein S1, Phosphoprotein, Ribonucleoprotein; NMR {Escherichia coli}
4	4XXI_A	157	78	63.9	93	[ -------------- ]	Phycobiliprotein ApcE; ApcE, phycobilisome, phycocyanobilin attachment, TRANSFERASE; HET: CYC; 2.2A {Nostoc sp. (strain PCC 7120 / UTEX 2576)}
5	2BA0_B	229	62	59.6	30	[ ----------- ]	Probable exosome complex RNA-binding protein; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus} SCOP: d.51.1.1, b.84.4.2, b.40.4.5
6	4XXK_A	157	75	59.0	93	[ -------------- ]	Phycobiliprotein ApcE; phycobilisome, ApcE, phycocyanobilin attachment, TRANSFERASE; HET: MSE, CYC; 2.97A {Nostoc sp. (strain PCC 7120 / UTEX 2576)}
7	2BA0_A	229	62	58.8	30	[ ----------- ]	Probable exosome complex RNA-binding protein; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus} SCOP: d.51.1.1, b.84.4.2, b.40.4.5
8	5A5T_F	364	6	55.1	34	[ - ]	EUKARYOTIC TRANSLATION INITIATION FACTOR 3; HYDROLASE, EIF3, EUKARYOTIC INITIATION FACTOR; 6.0A {ORYCTOLAGUS CUNICULUS}
9	2K4K_A	130	63	54.4	40	[ ----------- ]	General stress protein 13; S1, Stress response, RNA BINDING; NMR {Bacillus subtilis}
10	2L0T_B	163	53	54.2	79	[ --------- ]	Ubiquitin, Signal transducing adapter molecule; ubiquitin, VHS, Stam2, endosome, transport; NMR {Homo sapiens}
11	5JEA_H	316	68	53.7	29	[ ------------ ]	Exosome complex component RRP45, Exosome; exosome, Ski7, nuclease, RNA degradation; HET: MPD; 2.65A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
12	2EQS_A	103	63	53.4	46	[ ----------- ]	ATP-dependent RNA helicase DHX8 (E.C.3.6.1.-); S1 domain, OB-fold, Structural Genomics; NMR {Homo sapiens}
13	5X51_S	171	61	53.1	29	[ ----------- ]	DNA-directed RNA polymerase subunit (E.C.2.7.7.6); transcription, RNA polymerase, TRANSFERASE; HET: ZN; 6.996A {Komagataella phaffii (strain GS115 / ATCC 20864)}
14	3M7N_B	179	62	52.8	23	[ ----------- ]	Putative uncharacterized protein AF_0206, Probable; exosome, RNA, Exonuclease, Hydrolase, Nuclease; 2.4A {Archaeoglobus fulgidus}
15	5XOG_G	171	61	52.3	29	[ ----------- ]	DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex; HET: APC; 3.0A {Komagataella phaffii (strain GS115 / ATCC 20864)}
16	2JA9_A	175	67	51.8	33	[ ------------ ]	EXOSOME COMPLEX EXONUCLEASE RRP40 (E.C.3.1.13.-); RNA-BINDING PROTEIN, RNA, EXOSOME, NUCLEASE; 2.2A {SACCHAROMYCES CEREVISIAE} SCOP: b.40.4.5, d.51.1.1
17	1SMX_A	96	61	50.2	69	[ ----------- ]	Ribonuclease E (E.C.3.1.4.-); OB-fold, RNA-binding, HYDROLASE; 1.8A {Escherichia coli} SCOP: b.40.4.5
18	1SLJ_A	96	61	49.5	69	[ ----------- ]	Ribonuclease E (E.C.3.1.4.-); OB-fold, RNA-binding, HYDROLASE; NMR {Escherichia coli} SCOP: b.40.4.5
19	2BA1_B	179	62	47.2	23	[ ----------- ]	hypothetical protein AF0206, Probable exosome; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus}
20	1GO3_E	187	60	47.2	45	[ ----------- ]	DNA-DIRECTED RNA POLYMERASE SUBUNIT E; TRANSFERASE, TRANSFERASE TRANSCRIPTION ; 1.75A {METHANOCOCCUS JANNASCHII} SCOP: b.40.4.5, d.230.1.1
21	1HH2_P	344	60	46.2	29	[ ----------- ]	N UTILIZATION SUBSTANCE PROTEIN A; TRANSCRIPTION REGULATION, TERMINATION; 2.1A {THERMOTOGA MARITIMA} SCOP: d.202.1.1, b.40.4.5, d.52.3.1
22	2C35_B	172	62	44.6	25	[ ----------- ]	DNA-DIRECTED RNA POLYMERASE II 16; TRANSCRIPTION, RNA POLYMERASE II, POLYMERASE; 2.7A {HOMO SAPIENS} SCOP: b.40.4.5, d.230.1.1
23	1KL9_A	182	65	43.8	77	[ ----------- ]	EUKARYOTIC TRANSLATION INITIATION FACTOR 2; OB FOLD, HELICAL DOMAIN, TRANSLATION; 1.9A {Homo sapiens} SCOP: a.60.14.1, b.40.4.5
24	5IYD_G	172	62	43.1	25	[ ----------- ]	DNA-directed RNA polymerase II subunit; initiation, RNA polymerase II, human; HET: ZN; 3.9A {Homo sapiens}
25	2MFI_A	96	60	42.7	48	[ ----------- ]	30S ribosomal protein S1; S1, ribosome binding, translation initiation; NMR {Escherichia coli}
26	4NNG_A	158	61	40.6	51	[ ----------- ]	30S ribosomal protein S1; beta barrel, RIBOSOMAL PROTEIN; 2.02A {Mycobacterium tuberculosis}
27	3HKZ_Q	180	60	40.5	51	[ ----------- ]	DNA-directed RNA polymerase subunit A'; RNA polymerase, archaea, Sulfolobus solfataricus; HET: F3S, ZN; 3.4A {Sulfolobus solfataricus}
28	2NN6_I	209	66	40.4	86	[ ------------ ]	Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: b.40.4.5, b.84.4.2
29	2Z0S_A	235	61	39.9	63	[ ----------- ]	Probable exosome complex RNA-binding protein; alpha/beta protein, Exosome, RNA BINDING; 3.2A {Aeropyrum pernix} SCOP: d.51.1.1, b.40.4.5
30	2ASB_A	251	61	39.6	62	[ ----------- ]	Transcription elongation protein nusA/RNA Complex; Protein-RNA complex, transcription-RNA COMPLEX; 1.5A {Mycobacterium tuberculosis} SCOP: d.52.3.1, b.40.4.5
31	4AYB_E	180	60	39.3	58	[ ----------- ]	DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6); TRANSFERASE, MULTI-SUBUNIT, TRANSCRIPTION; HET: ZN; 3.202A {SULFOLOBUS SHIBATAE}
32	3LDZ_B	140	72	38.9	2.5E+02	[ ------------ ]	Ubiquitin, Signal transducing adapter molecule; ubiquitin-binding, Endosome, Membrane, Protein transport; 2.6A {Bos taurus}
33	3L7Z_C	249	67	38.8	68	[ ----------- ]	Probable exosome complex exonuclease 2; Exosome, asymmetry, RNA processing, RNA; HET: SO4; 2.41A {Sulfolobus solfataricus}
34	2NN6_H	308	68	37.1	43	[ ------------ ]	Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: d.51.1.1, b.40.4.5, b.84.4.2
35	2RF4_C	214	67	37.0	98	[ ----------- ]	DNA-directed RNA polymerase I subunit; Transferase DNA/RNA, DNA-binding, Phosphorylation, RNA; 3.1A {Saccharomyces cerevisiae}
36	4QJF_A	190	61	36.9	79	[ ----------- ]	DNA-directed RNA polymerase, subunit E'; Transcription; 2.312A {Thermococcus kodakarensis}
37	5IE8_A	89	62	36.1	97	[ ----------- ]	30S ribosomal protein S1; Tuberculosis, MtRpsA, Trans-translation, POA, TRANSLATION; NMR {Mycobacterium leprae (strain TN)}
38	4Q7J_D	281	70	35.9	66	[ ------------- ]	Elongation factor Ts, Elongation factor; RNA polymerase, RNA binding motif; HET: SO4; 2.9A {Escherichia coli}
39	2R7Z_G	171	61	35.2	75	[ ----------- ]	DNA-DIRECTED RNA POLYMERASE II (E.C.2.7.7.6)/DNA-DIRECTED; TRANSFERASE/DNA/RNA, DNA DAMAGE, ZINC-FINGER, DNA-BINDING; 3.8A {Saccharomyces cerevisiae} SCOP: i.8.1.1
40	1YSH_E	84	40	34.4	78	[ ------- ]	ribosomal protein L30/ribosomal protein L37a40S; STRUCTURAL PROTEIN, RNA, STRUCTURAL PROTEIN-RNA; 9.5A {Triticum aestivum}
41	2CQO_A	119	64	34.2	1.3E+02	[ ----------- ]	Hypothetical protein FLJ11067; S1 domain, OB-fold, Structural Genomics; NMR {Homo sapiens}
42	3GO5_A	285	60	34.1	73	[ ----------- ]	Multidomain protein with S1 RNA-binding; S1 rna-binding domain, structural genomics; HET: EDO; 1.4A {Streptococcus pneumoniae}
43	1WI5_A	119	71	34.0	63	[ ------------- ]	RRP5 protein homolog; S1 domain, OB-fold, STRUCTURAL GENOMICS; NMR {Homo sapiens} SCOP: b.40.4.5
44	2RF4_E	214	67	33.5	98	[ ----------- ]	DNA-directed RNA polymerase I subunit; Transferase DNA/RNA, DNA-binding, Phosphorylation, RNA; 3.1A {Saccharomyces cerevisiae}
45	1Y14_D	171	61	32.4	75	[ ----------- ]	DNA-directed RNA polymerase II 32; transferase; 2.3A {Saccharomyces cerevisiae} SCOP: b.40.4.5, d.230.1.1
46	2JE6_I	251	67	32.4	77	[ ------------ ]	EXOSOME COMPLEX EXONUCLEASE 2 (E.C.3.1.13.-); NUCLEASE, HYDROLASE, RNA-BINDING, EXONUCLEASE, PHOSPHOROLYTIC; HET: 1PE; 1.6A {SULFOLOBUS SOLFATARICUS} SCOP: b.84.4.2, d.51.1.1, b.40.4.5
47	4MTN_A	407	58	31.6	68	[ ----------- ]	Transcription termination factor NusA; transcription termination factor NusA, PSI-BIOLOGY; HET: SO4; 2.579A {Planctomyces limnophilus}
48	1Q46_A	175	62	31.2	1.8E+02	[ ----------- ]	translation initiation factor 2 alpha; initiation factor, eIF2, translation, phosphorylation; 2.86A {Saccharomyces cerevisiae} SCOP: a.60.14.1, b.40.4.5
49	4NNI_A	161	63	30.5	93	[ ----------- ]	30S ribosomal protein S1; beta barrel, RIBOSOMAL PROTEIN; HET: VGL; 2.64A {Mycobacterium tuberculosis}
50	1LUZ_A	88	67	30.3	1.4E+02	[ ------------ ]	Protein K3; 5 stranded anti-parallel beta barrel; 1.8A {Vaccinia virus} SCOP: b.40.4.5
51	1LUZ_B	88	67	30.3	1.4E+02	[ ------------ ]	Protein K3; 5 stranded anti-parallel beta barrel; 1.8A {Vaccinia virus} SCOP: b.40.4.5
52	5HKQ_I	129	30	29.3	63	[ ----- ]	Contact-dependent inhibitor A, Uncharacterized protein; toxin, antitoxin, Structural Genomics, PSI-Biology; HET: MSE; 2.0A {Escherichia coli}
53	2P0T_A	176	59	29.2	1.9E+02	[ ---------- ]	UPF0307 protein PSPTO_4464; APC85033, conserved putative protein, Pseudomonas; 2.19A {Pseudomonas syringae pv. tomato} SCOP: a.290.1.1
54	3GO5_A	285	51	29.2	1E+02	[ ----------- ]	Multidomain protein with S1 RNA-binding; S1 rna-binding domain, structural genomics; HET: EDO; 1.4A {Streptococcus pneumoniae}
55	5JEA_I	295	24	28.5	1E+02	[ ---- ]	Exosome complex component RRP45, Exosome; exosome, Ski7, nuclease, RNA degradation; HET: MPD; 2.65A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
56	2NN6_G	289	73	28.0	87	[ -------------- ]	Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: b.40.4.5, d.51.1.1, b.84.4.2
57	2KHJ_A	109	61	26.5	3.2E+02	[ ----------- ]	30S ribosomal protein S1; ribosomal protein S1, OB fold; NMR {Escherichia coli}
58	3CW2_H	266	63	24.9	1.9E+02	[ ----------- ]	Translation initiation factor 2 subunit; AIF2, INTACT AIF2, INITIATION FACTOR; 2.8A {Sulfolobus solfataricus}
59	4AIM_A	726	64	24.8	1E+02	[ ------------ ]	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (E.C.2.7.7.8), RIBONUCLEASE, RNE/RNG; TRANSFERASE-PEPTIDE COMPLEX, KH DOMAIN, S1; 3.3A {CAULOBACTER VIBRIOIDES}
60	5X8P_8	370	66	24.1	1.8E+02	[ ------------ ]	50S ribosomal protein L13, chloroplastic,50S; Cryo-EM, ribosome, chloroplast ribosome; 3.4A {Spinacia oleracea}
61	1MHQ_B	148	52	23.4	4.2E+02	[ --------- ]	ADP-ribosylation factor binding protein GGA2; SUPER HELIX, PROTEIN TRANSPORT; 2.2A {Homo sapiens} SCOP: a.118.9.2
62	5C9S_B	572	63	22.3	36	[ ----------- ]	Rrp5-CTD; Ribosome biogenesis, Assembly Factor, TPR; 2.7A {Saccharomyces cerevisiae}
63	5K0Y_P	266	63	22.2	2.3E+02	[ ----------- ]	Eukaryotic translation initiation factor 2; eukaryotic translation initiation, ribosome, eIF3; 5.8A {Oryctolagus cuniculus}
64	2A19_A	175	63	21.8	1.5E+02	[ ----------- ]	Eukaryotic translation initiation factor 2; transferase, kinase, protein biosynthesis, protein; HET: ANP; 2.5A {Saccharomyces cerevisiae}
65	4CEK_A	307	41	21.2	3.2E+02	[ ------ ]	REGULATOR OF NONSENSE TRANSCRIPTS 2; TRANSCRIPTION; 2.35A {HOMO SAPIENS}
66	5MPB_U	338	43	20.8	6.8E+02	[ ------- ]	Proteasome subunit alpha type-1 (E.C.3.4.25.1); Macromolecular complex, 26S proteasome, Protease; HET: ANP, ADP; 7.8A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
67	5LM7_A	428	59	20.3	92	[ ----------- ]	Transcription termination/antitermination protein NusA, N; Transcription regulation antitermination Nus proteins; 3.35A {Escherichia coli O157:H7}