match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	COG4967	162	51	55.2	32	[       -----------------------------             ]	PilV	Tfp pilus assembly protein PilV
2	PRK06654	181	27	54.3	31	[             ----------------                    ]	fliL	flagellar basal body-associated protein FliL; Reviewed
3	PRK14408	257	27	50.4	24	[      ---------------                            ]	PRK14408	membrane protein; Provisional
4	TIGR02523	139	35	50.0	50	[       --------------------                      ]	type_IV_pilV	type IV pilus modification protein PilV. Pilus systems categorized as type IV pilins differ greatly from one another, with some showing greater similarty to type II or type III secretion systems than to each other. Members of this protein family represent the PilV protein of type IV pilus systems as found in Pseudomonas aeruginosa PAO1, Pseudomonas syringae DC3000, Neisseria meningitidis MC58, Xylella fastidiosa 9a5c, etc.
5	pfam01098	356	53	42.8	79	[     -------------------------------             ]	FTSW_RODA_SPOVE	Cell cycle protein. This entry includes the following members; FtsW, RodA, SpoVE
6	pfam10710	136	39	41.0	1.1E+02	[     ----------------------                      ]	DUF2512	Protein of unknown function (DUF2512). Proteins in this family are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
7	TIGR04143	25	11	36.8	23	[             -----                               ]	VPxxxP_CTERM	VPXXXP-CTERM protein sorting domain. This C-terminal protein sorting domain is detected, so far, in Methanohalophilus mahii DSM 5219 (five members) and Methanohalobium evestigatum Z-7303 (nine members). This domain resembles the PEP-CTERM, PEF-CTERM, and PGF-CTERM domains of other exosortase/archaeosortase systems. Member proteins co-cluster with a variant member of the exosortase/archaeosortase protein family, and represent a boutique second sorting system in these species.
8	COG2095	203	46	35.5	1.4E+02	[         --------------------------              ]	MarC	Small neutral amino acid transporter SnatA, MarC family
9	pfam10329	227	36	30.0	2.6E+02	[                     --------------------        ]	DUF2417	Region of unknown function (DUF2417). This is a region of a family of proteins conserved in fungi some of whose members also have the Abhydrolase_1, pfam00561, domain in their sequence. The function of this region is not known.
10	pfam01032	311	34	29.2	1.2E+02	[                 -------------------             ]	FecCD	FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.
11	COG5615	161	16	28.1	51	[        ---------                                ]	COG5615	Uncharacterized membrane protein
12	TIGR03778	24	15	25.6	71	[          --------                               ]	VPDSG_CTERM	VPDSG-CTERM protein sorting domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
13	cd05768	102	13	24.1	80	[                             -------             ]	IgC_CH4	CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
14	pfam14946	180	19	24.0	1.2E+02	[                                -----------      ]	DUF4501	Domain of unknown function (DUF4501). This family of proteins is found in eukaryotes. Proteins in this family are typically between 167 and 308 amino acids in length. The exact function of this protein remains unknown, but it is thought to be a single-pass membrane protein. This family contains many highly conserved cysteine residues.
15	pfam11023	114	28	22.6	97	[            ------------------                   ]	DUF2614	Protein of unknown function (DUF2614). This is a family of proteins conserved in the Bacillaceae family. Some members are annotated as being protein YgzB. The function is not known.
16	PRK14206	127	24	22.5	26	[       -------------                             ]	PRK14206	camphor resistance protein CrcB; Provisional
17	pfam05399	227	39	21.5	2.2E+02	[         ---------------------------             ]	EVI2A	Ectropic viral integration site 2A protein (EVI2A). This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumors.
18	PRK08238	479	39	21.2	2.9E+02	[       ----------------------                    ]	PRK08238	hypothetical protein; Validated
19	TIGR03063	29	9	20.1	1.3E+02	[               -----                             ]	srtB_target	sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.