match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	PRK00117	157	100	97.6	0.00072	[    -------------------------------------        ]	recX	recombination regulator RecX; Reviewed
2	pfam02631	121	91	95.8	0.045	[        ---------------------------------        ]	RecX	RecX family. RecX is a putative bacterial regulatory protein. The gene encoding RecX is found downstream of recA, and is thought to interact with the RecA protein.
3	COG2137	174	110	92.9	0.3	[    -----------------------------------------    ]	RecX	SOS response regulatory protein OraA/RecX, interacts with RecA
4	PRK14136	309	101	81.8	14	[  ---------------------------------------        ]	recX	recombination regulator RecX; Provisional
5	pfam07111	739	72	56.3	34	[                  --------------------------     ]	HCR	Alpha helical coiled-coil rod protein (HCR). This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
6	pfam12279	129	30	53.0	9.7	[                                ------------     ]	DUF3619	Protein of unknown function (DUF3619). This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
7	TIGR04514	105	36	37.8	29	[                                    -------------]	GWxTD_dom	GWxTD domain. This domain, about 100 amino acids long, occurs in Actinobacteria and other little-studied Gram-negative bacteria, Sec-dependent proteins 300-800 in length. The domain is rich in aromatic residues, with Trp, Tyr, or Phe as the majority amino acid in ten of the twenty-four most-conserved residue positions.
8	TIGR01933	261	77	36.9	1.6E+02	[          ----------------------------------     ]	hflK	HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (SS 8/27/03
9	TIGR03299	309	54	33.4	26	[                            -------------------- ]	LGT_TIGR03299	phage/plasmid-like protein TIGR03299. Members of this uncharacterized protein family are found in various Mycobacterium phage genomes, in Streptomyces coelicolor plasmid SCP1, and in bacterial genomes near various markers that suggest lateral gene transfer. The function is unknown.
10	pfam06698	58	19	31.6	53	[                            ------               ]	DUF1192	Protein of unknown function (DUF1192). This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
11	PRK02919	82	17	24.1	63	[                                         ------  ]	PRK02919	oxaloacetate decarboxylase subunit gamma; Provisional
12	pfam15368	170	21	23.8	75	[             -------                             ]	BioT2	Spermatogenesis family BioT2. BioT2 is a family of eukaryotic proteins expressed only in the testes. BioT2 is found abundantly in five types of murine cancer cell lines, suggesting it plays a role in testes development as well as tumorigenesis.
13	pfam05926	140	34	23.0	2E+02	[                                 ------------    ]	Phage_GPL	Phage head completion protein (GPL). This family consists of several phage head completion protein (GPL) as well as related bacterial sequences. Members of this family allow the completion of filled heads by rendering newly packaged DNA in the heads resistant to DNase. The protein is thought to bind to DNA filled capsids.
14	PRK06563	255	59	22.2	1.6E+02	[                          ---------------------- ]	PRK06563	enoyl-CoA hydratase; Provisional
15	TIGR00789	82	31	21.4	1.2E+02	[                              -----------        ]	flhB_rel	flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
16	cd11586	54	34	20.5	1.2E+02	[                 --------------                  ]	VbhA_like	VbhA antitoxin and related proteins. VbhA is the antitoxin to VbhT. The VbhT toxin of the mammalian pathogen Bartonella schoenbuchensis is responsible for the disruptive adenylation of host proteins. VbhT also induces FIC-domain-mediated growth arrest in bacteria; it is inhibited by this antitoxin which binds to block the ATP binding site of the VbhT FIC domain.