match no.target idtarget lengthalignment lengthprobabilityE-valuecoveragematch description
15U31_A113017099.42.4E-13[                      ---------------------------]CRISPR-associated endonuclease C2c1/RNA Complex; Type V CRISPR-Cas endonculease: C2c1:; HET: SO4, MSE; 2.89A {Alicyclobacillus acidoterrestris}
25U33_A113017099.32.4E-13[                      ---------------------------]CRISPR-associated endonuclease C2c1/RNA Complex; Type V CRISPR-Cas endonculease: C2c1:; 3.75A {Alicyclobacillus acidoterrestris (strain ATCC 49025 / DSM 3922 / CIP 106132 / NCIMB 13137 / GD3B)}
35ID6_A122815899.24.9E-12[                     -------------------------   ]Cpf1/RNA Complex; HYDROLASE; HET: MSE; 2.382A {Lachnospiraceae bacterium ND2006}
45XH6_A131016699.22E-12[                      ---------------------------]CRISPR-associated endonuclease Cpf1/RNA/DNA Complex; nuclease, HYDROLASE-RNA-DNA complex; HET: EDO; 2.0A {Acidaminococcus sp. (strain BV3L6)}
55NG6_A130214799.14E-12[                      ------------------------   ]CRISPR-associated endonuclease Cpf1/RNA Complex; CRISPR, Cas, Cpf1, Cas12a, nuclease; 3.342A {Francisella tularensis subsp. novicida (strain U112)}
65XUT_A123115899.16.1E-12[                     -------------------------   ]CRISPR-associated endonuclease Cpf1/RNA/DNA Complex; nuclease, HYDROLASE-RNA-DNA complex; 2.4A {Lachnospiraceae bacterium ND2006}
75NFV_A130214999.01.4E-10[                      ------------------------   ]CRISPR-associated endonuclease Cpf1/DNA Complex; CRISPR, Cas, Cpf1, Cas12a, nuclease; HET: B3P; 2.501A {Francisella tularensis subsp. novicida (strain U112)}
84QIW_P493594.20.032[                                            -----]DNA-directed RNA polymerase (E.C.2.7.7.6), DNA-directed; Transcription, DNA-directed RNA polymerase; HET: ZN; 3.5A {Thermococcus kodakarensis}
93WWL_A543293.40.062[                                            -----]Alpha-aminoadipate carrier protein LysW; Zinc Finger, Amino acid carrier; HET: UN1; 1.2A {Thermus thermophilus HB27}
102K4X_A553993.40.082[                                           ------]30S ribosomal protein S27ae; 30S ribosomal protein S27A, Metal-binding; HET: ZN; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
115NJT_p543093.20.052[                                            -----]30S ribosomal protein S2, 30S; 100S, Bacillus subtilis, cryo-EM, Hibernation;{Bacillus subtilis subsp. subtilis str. 168}
125K2M_F533192.80.093[                                            -----]RimK-related lysine biosynthesis protein, Probable; ATP-dependent amine/thiol ligase family Amino-group; HET: SO4, UN1, ADP, PO4; 2.18A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
132Y0S_X483692.70.077[                                            -----]DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6), DNA-DIRECTED; TRANSFERASE, NUCLEOTIDYLTRANSFERASE, TRANSCRIPTION, METAL-BINDING; HET: F3S, ZN; 3.8A {SULFOLOBUS SHIBATAE}
143G71_Z733692.50.074[                                            -----]PROTEIN/RNA Complex; large ribosomal subunit, Haloarcula marismortui; HET: CL, SR, MG, WIN, NA; 2.85A {Haloarcula marismortui}
155K2M_K533192.40.086[                                            -----]RimK-related lysine biosynthesis protein, Probable; ATP-dependent amine/thiol ligase family Amino-group; HET: PO4, SO4, UN1, ADP; 2.18A {Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
163J43_Y503191.90.1[                                           ----- ]PROTEIN/RNA Complex; archaea, archaeal, ribosomal, 30S, protein; 9.0A {Methanococcus jannaschii}
175JBH_Y503191.90.1[                                           ----- ]30S ribosomal protein S3, 50S; transcription; HET: 5MU, OMC, H2U, GNP; 5.34A {Pyrococcus furiosus DSM 3638}
181PFT_A503591.70.16[                                            -----]TFIIB; N-TERMINAL DOMAIN, TFIIB, TRANSCRIPTION INITIATION; HET: ZN; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
194AYB_P483591.50.077[                                            -----]DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6); TRANSFERASE, MULTI-SUBUNIT, TRANSCRIPTION; HET: ZN; 3.202A {SULFOLOBUS SHIBATAE}
205IY9_L583491.20.13[                                            -----]DNA-directed RNA polymerase II subunit; initiation, RNA polymerase II, human; HET: ZN; 6.3A {Homo sapiens}
215FLM_L583490.40.14[                                            -----]DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6), DNA-DIRECTED; TRANSCRIPTION, ELONGATION; 3.4A {BOS TAURUS}
224Y4O_15603190.00.21[                                            -----]50S Ribosomal Protein L2, 50S; Ribosome, rRNA modofications, pseudouridine, rRNA; HET: UR3, OMG, MPD, 2MG, ZN, MG, MA6, ARG, 2MA, 4OC, 5MU, 7MG, 5MC, 0TD, M2G, PSU, SF4, 2MU; 2.3A {Thermus thermophilus HB8}
235X4Z_L733389.90.2[                                            -----]DNA-directed RNA polymerase subunit (E.C.2.7.7.6); transcription, RNA polymerase, TRANSFERASE; HET: ZN; 7.8A {Komagataella phaffii (strain GS115 / ATCC 20864)}
245T7V_LE532889.20.24[                                            -----]PROTEIN/RNA Complex; 70S ribosome, methicillin resistant, linezolid; HET: MG; 3.6A {Staphylococcus aureus}
251PNU_Z583087.90.37[                                            -----]50S RIBOSOMAL SUBUNIT; 50S Ribosomal Subunit, PROTEIN-PROTEIN COMPLEX; 8.7A {Escherichia coli} SCOP: i.1.1.1
261VD4_A623687.00.26[                                            -----]Transcription initiation factor IIE, alpha; ZINC FINGER, Transcription; HET: ZN; NMR {Homo sapiens} SCOP: g.41.3.1
274CE4_51463086.80.4[                                            -----]MRPL27, MRPL28, MRPL47, MRPL30, MRPL32; RIBOSOME, MAMMALIAN MITOCHONDRIAL RIBOSOME, 39S; 4.9A {SUS SCROFA DOMESTICA}
285FMF_L462986.10.49[                                            -----]DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}
294RVZ_Z4203785.50.45[                                           ------]tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS (E.C.6.3.4.22); tRNA modification, phosphorylation, tias, LIGASE; HET: ZNN, ACP; 2.9A {Archaeoglobus fulgidus}
304ILO_A2572985.14.7[                                            ---- ]CT398; hypothetical protein, DNA/RNA binding, coiled-coil; 2.12A {Chlamydia trachomatis}
315XOG_L723384.60.5[                                            -----]DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex; HET: APC; 3.0A {Komagataella phaffii (strain GS115 / ATCC 20864)}
321GH9_A712883.40.63[                                            ---- ]8.3 KDA PROTEIN (GENE MTH1184); BETA+ALPHA COMPLEX STRUCTURE, STRUCTURAL GENOMICS; NMR {Methanothermobacter thermautotrophicus} SCOP: g.41.6.1
335MRE_W1122882.50.15[                                            -----]54S ribosomal protein RML2, mitochondrial; yeast, mitochondrial, ribosome, saccharomyces cerevisiae; HET: GDP, MG; 3.75A {Saccharomyces cerevisiae}
342NN6_I2093281.31.1[                                            -----]Polymyositis/scleroderma autoantigen 1, Exosome complex; RNA, exosome, PM/Scl, exoribonuclease, phosphorolytic; 3.35A {Homo sapiens} SCOP: b.40.4.5, b.84.4.2
352GMG_A1058380.91.6[                                 ----------------]hypothetical protein Pf0610; winged-helix like protein with metal; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
364V19_51883580.40.35[                                           ------]MITORIBOSOMAL PROTEIN BL27M, MRPL27, MITORIBOSOMAL; RIBOSOME, TRANSLATION, LARGE RIBOSOMAL SUBUNIT; HET: MG; 3.4A {SUS SCROFA}
371TFI_A503180.11.3[                                            -----]TRANSCRIPTIONAL ELONGATION FACTOR SII (TFIIS; TRANSCRIPTION REGULATION; HET: ZN; NMR {Homo sapiens} SCOP: g.41.3.1
381VQO_1573578.81[                                            -----]50S RIBOSOMAL SUBUNIT; ribosome 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA; HET: SR, NA, MG, CL; 2.2A {Haloarcula marismortui} SCOP: g.41.8.2
393J6B_W1832778.30.36[                                            -----]PROTEIN/RNA Complex; mitochondrial ribosome, large subunit, protein-RNA; HET: MG; 3.2A {Saccharomyces cerevisiae}
402AKL_A1383478.11.4[                                            -----]phnA-like protein pa0128; Two domains Zn binding; HET: ZN; NMR {Pseudomonas aeruginosa PAO1} SCOP: g.41.3.5, b.34.11.2
414WFA_Z583177.51.5[                                            -----]RNA (2923-MER), RNA (114-MER); Ribosome, RNA, bacteria; HET: ZLD, EPE, SPD, MG, MPD, EOH, MN; 3.392A {Staphylococcus aureus subsp. aureus NCTC 8325}
421QVF_Z563577.11.2[                                            -----]50S RIBOSOMAL SUBUNIT; ribosome 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA; HET: NA, CL, MG; 3.1A {Haloarcula marismortui} SCOP: g.41.8.2
433J44_g452976.61.6[                                            -----]PROTEIN/RNA Complex; archaea, archaeal, ribosomal, 50S, protein; 9.0A {Methanococcus jannaschii}
442KDX_A1194375.41.4[                                          -------]Hydrogenase/urease nickel incorporation protein hypA; metallochaperone, hydrogenase, Metal-binding, Nickel, METAL-BINDING; HET: ZN; NMR {Helicobacter pylori}
453M7N_B1793075.41.9[                                            -----]Putative uncharacterized protein AF_0206, Probable; exosome, RNA, Exonuclease, Hydrolase, Nuclease; 2.4A {Archaeoglobus fulgidus}
462JNY_A673674.72.6[                                           ------]Uncharacterized BCR; cgr1, NESG, Structural Genomics, PSI-2; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
472J9U_D763374.21.5[                                            -----]VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28; ZINC-FINGER, METAL-BINDING, PROTEIN TRANSPORT; 2.0A {SACCHAROMYCES CEREVISIAE} SCOP: g.41.11.1
482BA1_B1793074.11.9[                                            -----]hypothetical protein AF0206, Probable exosome; EXOSOME, RNASE PH, RNA DEGRADATION; 2.7A {Archaeoglobus fulgidus}
494V6U_Bg512973.92.2[                                            -----]PROTEIN/RNA Complex; archaea, archaeal, ribosomal, 70S, kink-turn; 6.6A {Pyrococcus furiosus}
503H0G_L632973.82.1[                                            ---- ]DNA-directed RNA polymerase II subunit; Transcription, Multi-protein complex, Polymerase, DNA-binding; HET: ZN; 3.65A {Schizosaccharomyces pombe}
512M6O_A483373.53.2[                                            -----]Uncharacterized protein; RbpA, RNAP, Sigma factor, TRANSCRIPTION; NMR {Streptomyces coelicolor}
521VQ8_Z833472.72.4[                                            -----]50S RIBOSOMAL SUBUNIT; ribosome 50S, PROTEIN-PROTEIN COMPLEX, RNA-RNA; HET: NA, CL, MG, SPS, SR; 2.2A {Haloarcula marismortui} SCOP: g.41.8.1
533H0G_U1133671.04[                                           ----- ]DNA-directed RNA polymerase II subunit; Transcription, Multi-protein complex, Polymerase, DNA-binding; HET: ZN; 3.65A {Schizosaccharomyces pombe}
544YBB_D1563070.82.5[                                            -----]Ribosome; Protein biosynthesis, ribosomes, RNA, transfer; HET: PEG, MA6, G7M, 1MG, PSU, OMU, MPD, GUN, PG4, SPD, 3TD, OMG, PGE, PUT, MEQ, 4D4, 1PE, UR3, OMC, D2T, ACY, MG, 2MA, 4OC, 5MU, 5MC, H2U, EDO, 6MZ, 2MG; 2.1A {Escherichia coli K-12}
552I2V_0563070.82.5[                                            -----]50S RIBOSOMAL SUBUNIT; ribosome, protein-nucleic acid complexes; HET: MG; 3.22A {Escherichia coli} SCOP: g.41.8.5
563H0G_U1133470.83.1[                                            -----]DNA-directed RNA polymerase II subunit; Transcription, Multi-protein complex, Polymerase, DNA-binding; HET: ZN; 3.65A {Schizosaccharomyces pombe}
572APO_B602570.42.4[                                            -----]Probable tRNA pseudouridine synthase B; Protein-Protein complex, Box H/ACA, snoRNP; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1
583NA7_A2562970.34.6[                                            ---- ]HP0958; flagellar biogenesis, flagellum export, C4; HET: EPE; 2.2A {Helicobacter pylori}
595FMF_R1603370.31.9[                                            -----]DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}
605NW3_A543170.02.3[                                            -----]Rubredoxin; Perdeuterated rubredoxin, pyrococcus furiosus, atomic; 0.59A {Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)}
611TWF_L702769.72.2[                                            ---- ]DNA-directed RNA polymerase II largest; TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR; HET: UTP; 2.3A {Saccharomyces cerevisiae} SCOP: g.41.9.2
624V6U_Be623569.52.3[                                            -----]PROTEIN/RNA Complex; archaea, archaeal, ribosomal, 70S, kink-turn; 6.6A {Pyrococcus furiosus}
632K5C_A951269.43[                                               - ]uncharacterized protein PF0385; pf0385, Structural Genomics, PSI-2, Protein; HET: ZN; NMR {Pyrococcus furiosus}
642QKD_A4043668.23.3[                                           ----- ]Zinc finger protein ZPR1; HELICAL HAIRPINS, BETA HELIX, ANTI-PARRALLEL; 2.0A {Mus musculus}
651QYP_A573167.93.9[                                            -----]RNA POLYMERASE II; TRANSCRIPTION, RNA POLYMERASE II SUBUNIT; HET: ZN; NMR {Thermococcus celer} SCOP: g.41.3.1
665IW4_B2583167.23.3[                                           ----- ]NADH pyrophosphatase (E.C.3.6.1.22); NAD, RNA, capping, Nudix, HYDROLASE; HET: NAD; 2.6A {Escherichia coli B354}
673JYW_Y523566.83.5[                                            -----]60S ribosomal subunit; eukaryotic ribosome, 80S, RACK1 protein; 8.9A {Thermomyces lanuginosus}
681VK6_A2693165.53.4[                                            ---- ]NADH pyrophosphatase (E.C.3.6.1.-); 1790429, NADH PYROPHOSPHATASE, STRUCTURAL GENOMICS; HET: MPD; 2.2A {Escherichia coli} SCOP: d.113.1.4, g.41.14.1
691CAA_A532865.33.4[                                            ---- ]RUBREDOXIN (OXIDIZED); ELECTRON TRANSPORT; 1.8A {Pyrococcus furiosus} SCOP: g.41.5.1
705T5H_n813565.34[                                            -----]PROTEIN/RNA Complex; Trypanosoma cruzi, ribosomal subunit, assmebly; HET: A2M, 7MG, OMC, OMG, 5MC, MG, OMU; 2.54A {Trypanosoma cruzi}
712RXN_.553064.33.7[                                            ---- ]PROTEIN; ELECTRON TRANSPORT; 1.54A {N/A}
724C2M_I1253363.95.1[                                            -----]DNA-DIRECTED RNA POLYMERASES I, II; TRANSCRIPTION, RIBOSOME BIOGENESIS; HET: SO4, ZN; 2.8A {SACCHAROMYCES CEREVISIAE}
734C2M_X1253363.95.1[                                            -----]DNA-DIRECTED RNA POLYMERASES I, II; TRANSCRIPTION, RIBOSOME BIOGENESIS; HET: ZN, SO4; 2.8A {SACCHAROMYCES CEREVISIAE}
743VPB_E563063.05.5[                                            ---- ]Putative acetylornithine deacetylase (E.C.3.5.1.16), Alpha-aminoadipate; ATP-dependent amine/thiol ligase family, ATP-dependent; HET: ADP, GLU, SO4; 1.8A {Sulfolobus tokodaii}
752PVE_A543161.94.6[                                            -----]Rubredoxin; rubredoxin, ultrahigh resolution, ELECTRON TRANSPORT; HET: ACT; 0.79A {Clostridium pasteurianum}
762JS4_A703461.16.9[                                           ------]UPF0434 protein BB2007; NESG, Northeast Structural Genomics Consortium; NMR {Bordetella bronchiseptica RB50}
772V3B_B553261.14.9[                                            -----]RUBREDOXIN REDUCTASE, RUBREDOXIN 2; ALKANE DEGRADATION, IRON-SULFUR PROTEIN, OXIDOREDUCTASE; HET: FAD; 2.45A {PSEUDOMONAS AERUGINOSA}
781YSH_D733560.65.4[                                           ----- ]ribosomal protein L30/ribosomal protein L37a40S; STRUCTURAL PROTEIN, RNA, STRUCTURAL PROTEIN-RNA; 9.5A {Triticum aestivum}
791TWF_I1223660.06.8[                                           ----- ]DNA-directed RNA polymerase II largest; TRANSCRIPTION, MRNA, MULTIPROTEIN COMPLEX, MOLECULAR; HET: UTP; 2.3A {Saccharomyces cerevisiae} SCOP: g.41.3.1
802JNE_A1011259.85.5[                                               --]Hypothetical protein yfgJ; C4, C3H, C7H, zinc fingers; HET: ZN; NMR {Escherichia coli} SCOP: g.41.18.1
812HF1_A683259.56.4[                                            -----]Tetraacyldisaccharide-1-P 4-kinase (E.C.2.7.1.130); Tetraacyldisaccharide-1-P 4-kinase, LpxK, lipid A; 1.9A {Chromobacterium violaceum} SCOP: b.171.1.1
825FMF_I1193659.47.2[                                           ----- ]DNA REPAIR HELICASE RAD25, SSL2; TRANSCRIPTION, PRE-INITIATION COMPLEX, RNA POLYMERASE; 6.0A {SACCHAROMYCES CEREVISIAE}
832JR6_A683359.27.6[                                           ------]UPF0434 protein NMA0874; solution, UPF0434 protein NMA0874, Structural; NMR {Neisseria meningitidis}
841H7V_A602959.16.3[                                            -----]RUBREDOXIN; ELECTRON TRANSPORT, RUBREDOXIN, GUILLARDIA THETA; HET: ZN; NMR {GUILLARDIA THETA} SCOP: g.41.5.1
852PK7_A693357.99.7[                                            -----]Uncharacterized protein; NESG, PlR1, putative Tetraacyldisaccharide-1-P 4-kinase; 2.2A {Pseudomonas fluorescens} SCOP: b.171.1.1
862M4Y_A562957.87[                                            ---- ]Rubredoxin; rubredoxin, ELECTRON TRANSPORT, Structural Genomics; NMR {Mycobacterium ulcerans}
874KYW_A2572757.76.8[                                            ---- ]Type-2 restriction enzyme DpnI (E.C.3.1.21.4); RESTRICTION ENDONUCLEASE-DNA COMPLEX, TYPE IIM; 2.35A {Streptococcus pneumoniae}
886RXN_A463357.47.3[                                            -----]RUBREDOXIN; ELECTRON TRANSFER(IRON-SULFUR PROTEIN); 1.5A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
893QT1_I1333357.311[                                            -----]DNA-directed RNA polymerase II subunit; TRANSFERASE-TRANSCRIPTION COMPLEX, RNA POLYMERASE II; 4.3A {Saccharomyces cerevisiae}
901H7A_A6053757.35.7[                                          ------ ]ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN; OXIDOREDUCTASE, REDUCTASE, ALLOSTERIC REGULATION, SUBSTRATE; HET: DTP; 2.75A {BACTERIOPHAGE T4} SCOP: c.7.1.3
914ESJ_B2572757.26.8[                                            ---- ]Type-2 restriction enzyme DpnI (E.C.3.1.21.4)/DNA; RESTRICTION ENDONUCLEASE-DNA COMPLEX, TYPE IIM; 2.05A {Streptococcus pneumoniae}
921FFK_W732956.35.3[                                            ---- ]LARGE RIBOSOMAL SUBUNIT (50S); ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.4A {Haloarcula marismortui} SCOP: g.41.8.1
931H77_.6053755.55.7[                                          ------ ]ANAEROBIC RIBONUCLEOTIDE-TRIPHOSPHATE REDUCTASE LARGE CHAIN; OXIDOREDUCTASE, REDUCTASE, ALLOSTERIC REGULATION, SUBSTRATE; HET: DGT; 2.43A {BACTERIOPHAGE T4}
941VWZ_j863555.37[                                            -----]Ribosomal protein Complex; mammalian, Sec61, translocation, translation, RIBOSOME; 3.4A {Sus scrofa}
955XOG_M853954.68.5[                                           ------]DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex; HET: APC; 3.0A {Komagataella phaffii (strain GS115 / ATCC 20864)}
962KN9_A812954.36.5[                                            -----]Rv3250c; tuberculosis, metalloprotein, rubredoxin, SSGCID, Structural; HET: ZN; NMR {Mycobacterium tuberculosis}
971T9P_C543153.67.5[                                            -----]Rubredoxin; rubredoxin, ELECTRON TRANSPORT; 1.5A {Clostridium pasteurianum} SCOP: g.41.5.1
984V4N_Ai783453.45.7[                                            -----]Preprotein translocase subunit SecE, Preprotein; archaea, archaeal, ribosomal, 50S, protein; 9.0A {Methanococcus jannaschii}
992NB9_A492853.212[                                            ---- ]Uncharacterized protein; zinc finger, UNKNOWN FUNCTION; HET: ZN; NMR {Caulobacter crescentus}
1005IT7_jj853553.27.6[                                            -----]KLLA0D16027p, 60S ribosomal protein L3; ribosome, translocation, IRES, eEF2; HET: GCP, MG, 6EM; 3.6A {Kluyveromyces lactis}
1015FJ8_I1103053.012[                                            -----]DNA-DIRECTED RNA POLYMERASE III SUBUNIT; RNA POLYMERASE III, POL III; 3.9A {SACCHAROMYCES CEREVISIAE}
1022FIY_A3093652.417[                                           ------]Protein fdhE homolog; FdhE protein, Pseudomonas aeruginosa, structural; 2.1A {Pseudomonas aeruginosa} SCOP: e.59.1.1
1033A43_A1393052.17[                                            -----]Hydrogenase nickel incorporation protein hypA; RoseRS_14473181045LZS_j973551.09.5[                                            -----]uL2, uL3, uL4, 60S ribosomal; Translation, Elongation, Ribosome; HET: 7C4, GDP, MG, SEP; 3.31A {Oryctolagus cuniculus}
1051S24_A873150.87.1[                                            ---- ]Rubredoxin 2; Rubredoxin, ELECTRON TRANSPORT; HET: CD; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
1064UKM_W873550.59.3[                                            -----]60S RIBOSOMAL PROTEIN L15-A, 60S; TRANSLATION, RIBOSOME, 40S, 60S, 80S; HET: MG, OHX, 3K8; 3.2A {SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C}
1074UJR_W873550.59.3[                                            -----]60S RIBOSOMAL PROTEIN L15-A, 60S; TRANSLATION, RIBOSOME, 40S, 60S, 80S; HET: MG, OHX; 2.8A {SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C}
1081LKO_A1912750.46.8[                                            -----]Rubrerythrin all-iron(II) form; Rubrerythrin, reduced form, diiron, four-helix; 1.63A {Desulfovibrio vulgaris} SCOP: g.41.5.1, a.25.1.1
1091B71_A1912750.46.8[                                            -----]RUBRERYTHRIN; ELECTRON TRANSPORT, IRON, FERROXIDASE; 1.9A {Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough} SCOP: a.25.1.1, g.41.5.1
1102LCQ_A1654550.318[                                         --------]Putative toxin VapC6; PIN domain, ZN ribbon domain; HET: ZN; NMR {Pyrococcus horikoshii}
1115FJ9_I1103050.212[                                            -----]DNA-DIRECTED RNA POLYMERASE III SUBUNIT; RNA POLYMERASE III, POL III; 4.6A {SACCHAROMYCES CEREVISIAE}
1125FLM_I1253049.611[                                            -----]DNA-DIRECTED RNA POLYMERASE (E.C.2.7.7.6), DNA-DIRECTED; TRANSCRIPTION, ELONGATION; 3.4A {BOS TAURUS}
1135AUN_A1393049.67.1[                                            -----]Probable hydrogenase nickel incorporation protein; protein complex, metallochaperone; HET: GOL, ADP, URE; 1.63A {Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)}
1145IY9_I1253049.19.5[                                            -----]DNA-directed RNA polymerase II subunit; initiation, RNA polymerase II, human; HET: ZN; 6.3A {Homo sapiens}
1155XON_V1082848.07.3[                                            ---- ]DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex, TRANSCRIPTION-RNA complex; HET: ZN; 3.83A {Komagataella phaffii (strain GS115 / ATCC 20864)}
1162MS3_A572947.212[                                            -----]Anaerobic nitric oxide reductase flavorubredoxin; rubredoxin, flavorubredoxin, nitric oxide reductase; HET: ZN; NMR {Escherichia coli K-12}
1171YV1_A2022446.811[                                            ---- ]Nigerythrin; Rubrerythrin, Rubredoxin, Hemerythrin, Electron Transfer; 1.5A {Desulfovibrio vulgaris subsp. vulgaris} SCOP: a.25.1.1, g.41.5.1
1185IJL_A10661144.514[                                            --   ]DNA polymerase II large subunit,DNA; DNA polymerase D-family, transferase; 2.19A {Pyrococcus abyssi (strain GE5 / Orsay)}
1193LPE_F592144.211[                                            ---- ]Putative transcription antitermination protein nusG; Transcription Regulation, Spt4, Spt5, NusG; 1.9A {Methanocaldococcus jannaschii}
1205IT9_f692743.813[                                            ---- ]40S ribosomal protein S0, 40S; IRES, ribosome, small, subunit; HET: MG; 3.8A {Kluyveromyces lactis}
1213J21_i832742.915[                                            ---- ]50S ribosomal protein L1P, 50S; archaea, archaeal, ribosomal, 70S, kink-turn; 6.6A {Pyrococcus furiosus}
1223PWF_A1702342.315[                                            ---- ]Rubrerythrin; Non heme iron peroxidases, oxidative; 1.64A {Pyrococcus furiosus}
1234V7H_B9722942.013[                                            ---- ]Ribosome; eukaryotic ribosome, 80S, RACK1 protein; HET: H2U, M2G, YYG, 1MA, OMC, 5MC, PSU, 5MU, OMG, 2MG, 7MG; 8.9A {Thermomyces lanuginosus}
1245FYW_W4826241.317[                                       ----------]DNA-DIRECTED RNA POLYMERASE II SUBUNIT; GENE EXPRESSION, TRANSCRIPTION INITIATION, TRANSCRIPTION; HET: ZN; 4.35A {SACCHAROMYCES CEREVISIAE}
1254A1A_Y1032740.616[                                            ---- ]RPL8, RIBOSOMAL PROTEIN L3, RPL4; EUKARYOTIC RIBOSOME, RIBOSOME, EUKARYOTIC INITIATION; HET: MG; 3.52A {TETRAHYMENA THERMOPHILA}
1261KQS_Y732939.213[                                            ---- ]Large Ribosomal Subunit (50S) Complexed; RIBOSOME ASSEMBLY, RNA-RNA, PROTEIN-RNA, PROTEIN-PROTEIN; HET: CL, BTN, PPU, MG, NA, PHA; 3.1A {Haloarcula marismortui} SCOP: g.41.8.1
1272QPZ_A1033339.020[                                            -----]Naphthalene 1,2-dioxygenase system ferredoxin subunit; Rieske ferredoxin, Aromatic hydrocarbons catabolism; 1.85A {Pseudomonas putida}
1283W0F_A2872838.822[                                            ---- ]Endonuclease 8-like 3 (E.C.3.2.2.-); HELIX TWO TURNS HELIX, ZINC; 2.0A {Mus musculus}
1291YUZ_A2022637.914[                                            ---- ]Nigerythrin; Rubrythrin, Rubredoxin, Hemerythrin, Electron TRansfer; 1.4A {Desulfovibrio vulgaris subsp. vulgaris} SCOP: a.25.1.1, g.41.5.1
1305JEA_I2953036.724[                                            -----]Exosome complex component RRP45, Exosome; exosome, Ski7, nuclease, RNA degradation; HET: MPD; 2.65A {Saccharomyces cerevisiae (strain ATCC 204508 / S288c)}
1311WII_A853636.527[                                           ----- ]Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc; HET: ZN; NMR {Mus musculus} SCOP: g.41.3.4
1323J79_h962636.423[                                            ---- ]PROTEIN/RNA Complex; emetine, RIBOSOME-INHIBITOR complex; HET: MG; 3.2A {Plasmodium falciparum}
1333PO3_S1783135.326[                                            ---- ]DNA-directed RNA polymerase II subunit; RNA Polymerase II, mRNA, Transcription; HET: PGE, EPE; 3.3A {Saccharomyces cerevisiae}
1344BPE_91892834.923[                                            ---- ]TRANSLATION INITIATION FACTOR EIF-1A FAMILY; RIBOSOME, TRANSLATION, TRANSLATION INITIATION, SMALL; HET: MG; 3.703A {TETRAHYMENA THERMOPHILA}
1351K3X_A2622834.623[                                            ---- ]ENDONUCLEASE VIII (E.C.3.2.-.-)/DNA Complex; HYDROLASE/DNA, HYDROLASE-DNA complex; HET: GOL, SO4; 1.25A {Escherichia coli} SCOP: g.39.1.8, b.113.1.1, a.156.1.2
1361SJG_A1123334.028[                                            -----]Toluene-4-monooxygenase system protein C; Rieske RoseRS_14473181372F9Y_B3043234.015[                                            -----]Acetyl-CoA carboxylase (EC 6.4.1.2), carboxyltransferase; zinc ribbon, crotonase superfamily, spiral; 3.2A {Escherichia coli} SCOP: c.14.1.4
1381RYQ_A692233.720[                                            ---- ]DNA-directed RNA polymerase, subunit e''; Structural genomics, RNA polymerase, PSI; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3
1391EE8_B2662733.727[                                            ---- ]CRYSTAL STRUCTURE OF MUTM (FPG); BETA SANDWICH, ZINC FINGER, HELIX; 1.9A {Thermus thermophilus} SCOP: b.113.1.1, a.156.1.2, g.39.1.8
1403DQY_A1063333.627[                                            -----]Toluene 1,2-dioxygenase system ferredoxin subunit; Rieske, iron-sulfur cluster, Aromatic hydrocarbons; 1.2A {Pseudomonas putida}
1414UJT_h912933.620[                                            ---- ]60S RIBOSOMAL PROTEIN L10, 60S; TRANSLATION, RIBOSOME, 40S, 60S, 80S; HET: OHX, MG; 2.8A {SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C}
1423QQC_E612233.116[                                            ---- ]DNA-directed RNA polymerase subunit b; transcription, fusion protein, chimera protein; 3.3A {Pyrococcus furiosus}
1434KTW_B1615933.11.2E+02[                          ----------             ]RuvC endonuclease; endonuclease, DNA junctions, replication, recombination; 1.68A {Lactococcus phage bIL67}
1444KTW_A1615933.11.2E+02[                          ----------             ]RuvC endonuclease; endonuclease, DNA junctions, replication, recombination; 1.68A {Lactococcus phage bIL67}
1455GPY_A2203032.826[                                            ---- ]General transcription factor IIE subunit; general transcription factor, RNA Polymerase; 2.1A {Homo sapiens}
1462KWQ_A922732.829[                                            ---- ]Protein MCM10 homolog; Mcm10, DNA replication, DNA binding; HET: ZN; NMR {Xenopus laevis}
1473IZ5_m922632.427[                                            ---- ]Ribosomal protein, 60S ribosomal protein; eukaryotic ribosome,homology modeling,de novo modeling,ribosomal; 5.5A {Triticum aestivum}
1481PJJ_A2712632.226[                                            ---- ]Formamidopyrimidine-DNA glycosylase (E.C.3.2.2.23)/DNA Complex; DNA repair, Fpg, MutM, abasic; HET: GOL; 1.9A {Lactococcus lactis} SCOP: g.39.1.8, b.113.1.1, a.156.1.2
1491Q3B_A2622732.128[                                            ---- ]Endonuclease VIII (E.C.3.2.2.-); hydrolase; 2.05A {Escherichia coli} SCOP: g.39.1.8, b.113.1.1, a.156.1.2
1505O60_b572831.710[                                            ---- ]50S ribosomal protein bL37, 50S; ribosome, translation; HET: PHE, MG; 3.203A {Mycobacterium smegmatis str. MC2 155}
1515O61_b572831.710[                                            ---- ]50S ribosomal protein bL37, 50S; ribosome, translation; HET: MG, PHE; 3.31A {Mycobacterium smegmatis str. MC2 155}
1522WWZ_C322531.626[                                            ---- ]UBIQUITIN, MITOGEN-ACTIVATED PROTEIN KINASE KINASE; PROTEIN BINDING, ISOPEPTIDE BOND, NZF; 1.4A {BOS TAURUS}
1533JAH_ff682831.428[                                            ---- ]uL2, uL3, uL4, uL18, eL6; termination, eRF1, ABCE1, RIBOSOME; HET: ADP, MG, SF4; 3.45A {Oryctolagus cuniculus}
1542F5Q_A2742631.129[                                            ---- ]formamidopyrimidine-DNA glycosidase (E.C.3.2.2.23)/DNA Complex; disulfide crosslink, DNA glycosylase, DNA; 2.35A {Geobacillus stearothermophilus} SCOP: b.113.1.1, a.156.1.2, g.39.1.8
1551K82_A2682631.028[                                            ---- ]Formamidopyrimidine-DNA glycosylase (E.C.3.2.2.23)/DNA Complex; PROTEIN-DNA COMPLEX, DNA REPAIR, BETA; 2.1A {Escherichia coli} SCOP: b.113.1.1, a.156.1.2, g.39.1.8
1563U6P_A2732631.029[                                            ---- ]Formamidopyrimidine-DNA glycosylase (E.C.3.2.2.23)/DNA complex; DNA glycosylase, DNA repair, sequence; 1.6A {Geobacillus stearothermophilus}
1574A1B_A943031.028[                                            -----]RIBOSOMAL PROTEIN L37, RPL39, 60S; RIBOSOME, EUKARYOTIC INITIATION FACTOR 6; 3.52A {TETRAHYMENA THERMOPHILA}
1584MB7_A2732630.232[                                            ---- ]Endonuclease 8-like L720; zinc-finger domain, H2TH-motif, DNA Glycosylase; HET: SO4; 2.04A {Acanthamoeba polyphaga mimivirus}
1593JBP_Ah853329.027[                                            -----]PROTEIN/RNA Complex; RIBOSOME; 6.7A {Plasmodium falciparum 3D7}
1602N95_A492728.954[                                           ----- ]Protein HIT1; Hit1, Zinc Finger, METAL BINDING; HET: ZN; NMR {Saccharomyces cerevisiae}
1612K2D_A793128.523[                                            ---- ]RING finger and CHY zinc; zinc-binding protein, Metal-binding, Nucleus, Zinc-finger; HET: ZN; NMR {Homo sapiens}
1625T5H_o853028.128[                                            ---- ]PROTEIN/RNA Complex; Trypanosoma cruzi, ribosomal subunit, assmebly; HET: OMC, A2M, 5MC, 7MG, MG, OMU, OMG; 2.54A {Trypanosoma cruzi}
1635TUU_B1114427.92E+02[                             -------             ]Transcription factor DP1, Transcription factor; Transcription factor, cell-cycle regulation, coiled; HET: GOL; 2.251A {Homo sapiens}
1643H7H_A1203227.814[                                           ----- ]Transcription elongation factor SPT4, Transcription; helices surrounding beta sheet, Transcription; 1.55A {Homo sapiens}
1652JRP_A811027.638[                                               - ]Putative cytoplasmic protein; two-zinc binding protein, Structural Genomics; HET: ZN; NMR {Salmonella typhimurium LT2}
1665AF6_G352627.138[                                            ---- ]UBIQUITIN, TRABID; SIGNALING PROTEIN, UBIQUITIN, UBIQUITIN TRABID; 3.4A {HOMO SAPIENS}
1672CON_A792527.133[                                            ---- ]nin one binding protein; RIBOSOME, RNA BINDING PROTEIN, UNKNOWN; HET: ZN; NMR {Mus musculus} SCOP: g.41.15.1
1683J74_p912925.834[                                            ---- ]Ribosomal protein uL12, Ribosomal protein; mammalian, Sec61, translocation, translation, eEF2; HET: MG; 3.5A {Sus scrofa}
1692AUS_B602325.240[                                            ---- ]Probable tRNA pseudouridine synthase B; ISOMERASE, STRUCTURAL PROTEIN, ISOMERASE-STRUCTURAL PROTEIN; HET: PO4; 2.1A {Pyrococcus abyssi}
1702I7F_B1083424.751[                                            -----]Ferredoxin component of dioxygenase; RIESKE FERREDOXIN, OXIDOREDUCTASE; HET: CIT; 1.9A {Sphingobium yanoikuyae}
1714OWF_G302324.044[                                            ---- ]NF-kappa-B essential modulator (E.C.6.3.2.-), ZINC; LUBAC, NF-kappa B, NEMO, HOIP; 2.0A {Mus musculus}
1725FLX_f1562724.041[                                            ---- ]40S RIBOSOMAL PROTEIN SA, 40S; RIBOSOME, TRANSLATION INITIATION, HEPATITIS C; HET: MG; 3.9A {ORYCTOLAGUS CUNICULUS}
1732WX0_C312423.745[                                            ---- ]UBIQUITIN, MITOGEN-ACTIVATED PROTEIN KINASE KINASE; PROTEIN BINDING, ISOPEPTIDE BOND, NZF; 2.4A {HOMO SAPIENS}
1742RFK_B532323.757[                                            ---- ]Probable tRNA pseudouridine synthase B; PROTEIN-RNA COMPLEX, Archaeal H-ACA Ribonucleoprotein; 2.87A {Pyrococcus furiosus} SCOP: g.41.16.1
1752AZE_B1064323.62.8E+02[                             -------             ]Transcription factor Dp-1, Transcription factor; beta sandwich, CELL CYCLE, TRANSCRIPTION; 2.55A {Homo sapiens} SCOP: e.63.1.2
1764R52_A1741523.538[                                            --   ]3-hydroxyanthranilate 3,4-dioxygenase (E.C.1.13.11.6); Cupin Rubredoxin, OXIDOREDUCTASE; 1.53A {Cupriavidus metallidurans CH34}
1774HVO_A1741423.538[                                            --   ]3-hydroxyanthranilate 3,4-dioxygenase (E.C.1.13.11.6); bi-cupin iron-binding, dioxygenase, OXIDOREDUCTASE; 1.75A {Cupriavidus metallidurans}
1781FQT_A1123223.168[                                            -----]RIESKE-TYPE FERREDOXIN OF BIPHENYL DIOXYGENASE; RIESKE-TYPE FERREDOXIN, 2FE-2S CLUSTER, BETA; HET: GOL; 1.6A {Burkholderia xenovorans} SCOP: b.33.1.1
1792KPI_A563422.859[                                           ----- ]Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all; HET: ZN; NMR {Streptomyces coelicolor}
1802LK0_A322322.457[                                            ---- ]RNA-binding protein 5; Zinc finger, RNA BINDING PROTEIN; HET: ZN; NMR {N/A}
1814AIV_A1193422.461[                                            -----]PROBABLE NITRITE REDUCTASE RoseRS_14473181822CT7_A862922.059[                                            ---- ]RING finger protein 31; RING finger protein 31, IBR; HET: ZN; NMR {Homo sapiens} SCOP: g.44.1.4
1833U50_C1722622.059[                                            ---- ]Telomerase-associated protein 82; tetrahymena, telomerase, Teb1, processivity factor; 2.5A {Tetrahymena thermophila}
1842FIY_A3092621.548[                                            -----]Protein fdhE homolog; FdhE protein, Pseudomonas aeruginosa, structural; 2.1A {Pseudomonas aeruginosa} SCOP: e.59.1.1
1851L1O_C1812921.554[                                            ---- ]Replication protein A 14 kDa; eukaryotic SSB, ssDNA binding protein; 2.8A {Homo sapiens} SCOP: b.40.4.3
1861L1O_F1812921.254[                                            ---- ]Replication protein A 14 kDa; eukaryotic SSB, ssDNA binding protein; 2.8A {Homo sapiens} SCOP: b.40.4.3
1874V8M_A91532721.150[                                            ---- ]Ribosome; RIBOSOME, EUKARYOTIC, KINETOPLASTIDS, EXPANSION SEGMENTS; 5.57A {TRYPANOSOMA BRUCEI BRUCEI}
1885XON_U1903020.968[                                            ---- ]DNA-directed RNA polymerase subunit, DNA-directed; transcription, complex, TRANSCRIPTION-RNA complex; HET: ZN; 3.83A {Komagataella phaffii (strain GS115 / ATCC 20864)}
1894TPU_A1732620.862[                                            -----]RUBREDOXIN; FTR-LIKE PROTEIN, DISULFIDE REDUCTASE, ELECTRON; HET: URE; 2.355A {Methanosarcina acetivorans}
1903A9J_C342520.556[                                            ---- ]Ubiquitin, Mitogen-activated protein kinase kinase; protein complex, Isopeptide bond, Metal-binding; 1.18A {Mus musculus}
1914UKC_F762920.473[                                            -----]40S RIBOSOMAL PROTEIN S26-B, 40S; TRANSLATION, RIBOSOME, 40S, 60S, 80S; HET: 3HE, MG, OHX; 2.9A {SACCHAROMYCES CEREVISIAE ATCC 204508 / S288C}