match no.	target id	target length	alignment length	probability	E-value	coverage	match description
1	COG3264	835	54	62.8	8.1	[                ----------------                 ]	MscK	Small-conductance mechanosensitive channel
2	pfam06169	76	41	42.5	38	[          ------------                           ]	DUF982	Protein of unknown function (DUF982). This family consists of several hypothetical proteins from Rhizobium meliloti, Rhizobium loti and Agrobacterium tumefaciens. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.
3	PRK13128	518	32	42.1	18	[         -----------                             ]	PRK13128	D-aminopeptidase; Reviewed
4	pfam08383	35	28	40.8	18	[           ---------                             ]	Maf_N	Maf N-terminal region. This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression, in erythroid differentiation, and in differentiation of the neuroretina.
5	COG1155	588	34	35.0	26	[        ------------                             ]	NtpA	Archaeal/vacuolar-type H+-ATPase catalytic subunit A/Vma1
6	pfam03861	56	15	29.7	46	[                -----                            ]	ANTAR	ANTAR domain. ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.
7	pfam00924	202	47	27.1	84	[                 --------------                  ]	MS_channel	Mechanosensitive ion channel. Two members of this protein family from M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.
8	cd01134	369	36	25.4	27	[        -------------                            ]	V_A-ATPase_A	V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
9	PRK13763	180	20	24.3	50	[              ------                             ]	PRK13763	putative RNA-processing protein; Provisional
10	TIGR03665	172	19	23.0	54	[              ------                             ]	arCOG04150	arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed, and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
11	TIGR01545	210	46	22.9	64	[                             ------------------  ]	YfhB_g-proteo	haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. This model describes a clade of sequences limited to the gamma proteobacteria. This group is a member of the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases and all of the conserved catalytic motifs are present. Although structurally similar to subfamily IA in that the variable domain is predicted to consist of five consecutive alpha helices (by PSI-PRED), it is sufficiently divergent to warrant being regarded as a separate sub-family (IF). The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
12	cd14807	98	28	22.7	1.2E+02	[          -----------                            ]	RAP_D2	Domain 2 of receptor-associated protein (RAP). This subfamily is the N-terminal domain (D2) of receptor-associated protein, RAP, an antagonist and a specialized chaperone in the endoplasmic reticulum that binds tightly to members of the low-density lipoprotein (LDL) receptor family and prevents them from associating with other ligands. D2, along with RAP domain 1 (D1), is essential for blocking low-density lipoprotein receptor-related protein (LRP) from binding of certain ligands, such as alpha2-macroglobulin; D1 and D2 each bind LRP weakly but the tandem D1D2 binds much more tightly to the second and the fourth ligand-binding clusters present on LRP, suggesting the avidity effects arising from amino acid residues contributed from each domain. Also, RAP has regions that interact weakly with heparin, one located in D2 and two located in D3. The double module of complement type repeats, CR56, of LRP binds many ligands including alpha2-macroglobulin, which promotes the catabolism of the Abeta-peptide implicated in Alzheimer's disease.
13	pfam01265	239	28	22.3	44	[                              -----------        ]	Cyto_heme_lyase	Cytochrome c/c1 heme lyase.
14	pfam09105	61	23	21.0	89	[            --------                             ]	SelB-wing_1	Elongation factor SelB, winged helix. Members of this family adopt a winged-helix fold, with an alpha/beta structure consisting of three alpha-helices and a twisted three-stranded antiparallel beta-sheet, with an alpha-beta-alpha-alpha-beta-beta connectivity. They are involved in both DNA and RNA binding.