match no. | target id | target length | alignment length | probability | E-value | coverage | match description |
1 | pfam09670 | 379 | 103 | 98.2 | 5.3E-06 | [ --------- ] | Cas_Cas02710 | CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia). |
2 | cd09747 | 378 | 103 | 98.2 | 5.4E-06 | [ --------- ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family |
3 | cd09747 | 378 | 85 | 96.6 | 0.0019 | [ ------ ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family |
4 | pfam09670 | 379 | 84 | 96.4 | 0.0024 | [ ------ ] | Cas_Cas02710 | CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia). |
5 | cd09702 | 378 | 105 | 96.4 | 0.0047 | [ --------- ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TIGR02710 family |
6 | pfam09002 | 379 | 169 | 96.2 | 0.047 | [ -------------- ] | DUF1887 | Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins. |
7 | TIGR02710 | 380 | 97 | 95.8 | 0.016 | [ -------- ] | TIGR02710 | CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia). |
8 | TIGR02710 | 380 | 84 | 93.1 | 0.025 | [ ------ ] | TIGR02710 | CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia). |
9 | cd09702 | 378 | 87 | 91.2 | 0.05 | [ ------ ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TIGR02710 family |
10 | pfam09623 | 225 | 111 | 90.1 | 2 | [ --------- ] | Cas_NE0113 | CRISPR-associated protein NE0113 (Cas_NE0113). Members of this minor CRISPR-associated (Cas) protein family are encoded in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum. |
11 | pfam09002 | 379 | 137 | 88.1 | 0.45 | [---------- ] | DUF1887 | Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins. |
12 | cd09741 | 219 | 119 | 80.8 | 14 | [ --------- ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family |
13 | PRK07806 | 248 | 117 | 68.8 | 3.3 | [ --------- ] | PRK07806 | short chain dehydrogenase; Provisional |
14 | PRK11823 | 446 | 123 | 46.9 | 55 | [ ------------ ] | PRK11823 | DNA repair protein RadA; Provisional |
15 | cd09742 | 183 | 37 | 42.4 | 22 | [ --- ] | Csm6_III-A | CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family |
16 | PRK14171 | 288 | 16 | 38.0 | 19 | [- ] | PRK14171 | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional |
17 | pfam09651 | 136 | 31 | 37.9 | 43 | [ -- ] | Cas_APE2256 | CRISPR-associated protein (Cas_APE2256). This entry represents a conserved region of about 150 amino acids found in at least five archaeal and three bacterial species. These species all contain CRISPRs (Clustered Regularly Interspaced Short Palindromic Repeats). In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus. |
18 | PRK14181 | 287 | 17 | 31.1 | 29 | [- ] | PRK14181 | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional |
19 | PRK10792 | 285 | 16 | 27.2 | 37 | [- ] | PRK10792 | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional |
20 | TIGR03642 | 124 | 42 | 24.2 | 97 | [ --- ] | cas_csx14 | CRISPR-associated protein, Csx14 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown. |
21 | cd09723 | 132 | 42 | 22.1 | 1.1E+02 | [ --- ] | Csx1_III-U | CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as csx13 family |
22 | PRK14188 | 296 | 40 | 21.1 | 55 | [--- ] | PRK14188 | bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional |